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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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ZBED3
zinc finger BED-type containing 3
Chromosome 5 · 5q13.3
NCBI Gene: 84327Ensembl: ENSG00000132846.7HGNC: HGNC:20711UniProt: Q96IU2
31PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
GO:0005615response to glucoseresponse to insulinnegative regulation of protein phosphorylationtype 2 diabetes mellitusdiabetes mellitusdiabetic neuropathytricuspid valve disease
✦AI Summary

ZBED3 (zinc finger BED-type containing 3) is a transcriptional regulator that plays critical roles in metabolic homeostasis and cancer biology. The protein functions as a positive regulator of the canonical Wnt/β-catenin signaling pathway by stabilizing cytoplasmic β-catenin and promoting transcription of Wnt target genes 12. ZBED3 promotes hepatic steatosis by interacting with polypyrimidine tract-binding protein 1 (PTBP1) to regulate SREBP1c mRNA stability and alternative splicing, contributing to fatty acid synthesis 3. Elevated ZBED3 expression is associated with metabolic syndrome, correlating positively with adiposity markers, glucose parameters, and inflammatory markers 4. In cancer contexts, ZBED3 acts as an oncogenic factor, promoting hepatocellular carcinoma cell proliferation through the Wnt/β-catenin pathway 5 and lung cancer cell growth via β-catenin regulation and PCNA expression 1. The protein's BED finger domain is essential for its regulatory functions, particularly in cancer cell proliferation 1. Additionally, ZBED3 participates in the subcortical maternal complex and plays a role in early embryonic development, with variants potentially causing female infertility through early embryo arrest 6.

Sources cited
1
ZBED3 promotes hepatic steatosis by interacting with PTBP1 and regulating SREBP1c mRNA stability
PMID: 39037604
2
ZBED3 promotes hepatocellular carcinoma cell proliferation via Wnt/β-catenin signaling
PMID: 38182896
3
ZBED3 positively regulates adipogenic differentiation by inhibiting WNT/β-catenin pathway
PMID: 33712067
4
Circulating ZBED3 levels are elevated in metabolic syndrome and correlate with metabolic parameters
PMID: 28346859
5
ZBED3 promotes lung cancer cell proliferation through β-catenin regulation and its BED finger domain is essential for function
PMID: 30805970
6
ZBED3 participates in the subcortical maternal complex and variants cause early embryo arrest
PMID: 37148315
Disease Associationsⓘ20
type 2 diabetes mellitusOpen Targets
0.46Moderate
diabetes mellitusOpen Targets
0.37Weak
diabetic neuropathyOpen Targets
0.30Weak
tricuspid valve diseaseOpen Targets
0.24Weak
breast cancerOpen Targets
0.07Suggestive
cancerOpen Targets
0.06Suggestive
gastric cancerOpen Targets
0.06Suggestive
esophageal diseaseOpen Targets
0.06Suggestive
ThyrotoxicosisOpen Targets
0.05Suggestive
gastroesophageal reflux diseaseOpen Targets
0.05Suggestive
Hashimoto's thyroiditisOpen Targets
0.05Suggestive
lung cancerOpen Targets
0.04Suggestive
hyperthyroidismOpen Targets
0.04Suggestive
hypothyroidismOpen Targets
0.04Suggestive
Isolated anophthalmia - microphthalmiaOpen Targets
0.04Suggestive
isolated microphthalmia 7Open Targets
0.04Suggestive
microphthalmiaOpen Targets
0.04Suggestive
nanophthalmiaOpen Targets
0.04Suggestive
nanophthalmos 2Open Targets
0.04Suggestive
non-alcoholic fatty liver diseaseOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
AXIN1Protein interaction74%ZFAND6Protein interaction71%NLRP5Protein interaction53%OOEPProtein interaction52%PADI6Protein interaction51%TLE6Shared pathway25%
Tissue Expression6 tissues
Brain
100%
Liver
74%
Heart
62%
Bone Marrow
58%
Ovary
55%
Lung
30%
Gene Interaction Network
Click a node to explore
ZBED3AXIN1ZFAND6NLRP5OOEPPADI6TLE6
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q96IU2
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.95LoF Tolerant
pLIⓘ
0.04Tolerant
Observed/Expected LoF2.74 [0.57–1.95]
RankingsWhere ZBED3 stands among ~20K protein-coding genes
  • #11,834of 20,598
    Most Researched31
  • #17,664of 17,882
    Most Constrained (LOEUF)1.95
Genes detectedZBED3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Zinc finger BED-type containing 3 promotes hepatic steatosis by interacting with polypyrimidine tract-binding protein 1.
PMID: 39037604
Diabetologia · 2024
1.00
2
RNA 5-methylcytosine writer NSUN5 promotes hepatocellular carcinoma cell proliferation via a ZBED3-dependent mechanism.
PMID: 38182896
Oncogene · 2024
0.90
3
Lnc13728 facilitates human mesenchymal stem cell adipogenic differentiation via positive regulation of ZBED3 and downregulation of the WNT/β-catenin pathway.
PMID: 33712067
Stem Cell Res Ther · 2021
0.80
4
lncRNA Biomarkers of Glioblastoma Multiforme.
PMID: 38790894
Biomedicines · 2024
0.70
5
Implication of lncRNA ZBED3-AS1 downregulation in acquired resistance to Temozolomide and glycolysis in glioblastoma.
PMID: 36462734
Eur J Pharmacol · 2023
0.60