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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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ZDBF2
zinc finger DBF-type containing 2
Chromosome 2 · 2q33.3
NCBI Gene: 57683Ensembl: ENSG00000204186.12HGNC: HGNC:29313UniProt: N0DVB2
40PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
genomic imprintingnucleic acid bindingzinc ion binding
✦AI Summary

ZDBF2 (zinc finger DBF-type containing 2) is a paternally expressed imprinted gene that plays a critical role in genomic imprinting regulation through a unique transient mechanism. The gene exhibits paternal allele-specific expression in various embryonic and adult tissues, except for placenta and adult testis which show biallelic expression 1. ZDBF2 imprinting is regulated by a novel mechanism involving a transient paternal transcript (GPR1-AS in humans, Liz/Zdbf2linc in mice) that arises from the unmethylated paternal allele and establishes secondary epigenetic marks to maintain ZDBF2 expression 2. This imprinting mechanism originated evolutionarily through insertion of a MER21C long terminal repeat retrotransposon in the common ancestor of Euarchontoglires 2. The gene demonstrates dynamic genomic imprinting, with maternal germline differentially methylated regions controlling transient expression patterns that switch from maternal to paternal imprinting during embryonic development 3. ZDBF2 has clinical relevance beyond development, as it has been identified as upregulated in aging skeletal muscle through artificial neural network analysis 4 and associated with treatment-resistant schizophrenia through polygenic overlap with BMI 5. The gene also shows involvement in cancer contexts, with mutations identified in canine gastrointestinal lymphoma 6.

Sources cited
1
ZDBF2 is paternally expressed in most tissues except placenta and adult testis
PMID: 19200453
2
ZDBF2 imprinting involves transient paternal transcript GPR1-AS and evolved through MER21C retrotransposon insertion
PMID: 40455561
3
The gene demonstrates dynamic genomic imprinting with maternal germline DMRs controlling transient expression patterns
PMID: 24589776
4
ZDBF2 is upregulated in aging skeletal muscle
PMID: 39210538
5
ZDBF2 is associated with treatment-resistant schizophrenia through polygenic overlap with BMI
PMID: 37146461
6
ZDBF2 mutations are found in canine gastrointestinal lymphoma
PMID: 40046420
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SENP6Protein interaction79%SLX9Protein interaction79%KDM1BShared pathway50%PRMT7Shared pathway33%DIRAS3Shared pathway33%CTCFLShared pathway20%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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ZDBF2SENP6SLX9KDM1BPRMT7DIRAS3CTCFL
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9HCK1
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Constraintⓘ
LOEUFⓘ
1.40LoF Tolerant
pLIⓘ
0.04Tolerant
Observed/Expected LoF0.67 [0.35–1.40]
RankingsWhere ZDBF2 stands among ~20K protein-coding genes
  • #10,264of 20,598
    Most Researched40
  • #14,464of 17,882
    Most Constrained (LOEUF)1.40
Genes detectedZDBF2
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Identification of the mouse paternally expressed imprinted gene Zdbf2 on chromosome 1 and its imprinted human homolog ZDBF2 on chromosome 2.
PMID: 19200453
Genomics · 2009
1.00
2
Post-fertilization transcription initiation in an ancestral LTR retrotransposon drives lineage-specific genomic imprinting of
PMID: 40455561
Elife · 2025
0.90
3
Artificial neural network inference analysis identified novel genes and gene interactions associated with skeletal muscle aging.
PMID: 39210538
J Cachexia Sarcopenia Muscle · 2024
0.80
4
Epigenetic and transcriptional features of the novel human imprinted lncRNA GPR1AS suggest it is a functional ortholog to mouse Zdbf2linc.
PMID: 23764515
Epigenetics · 2013
0.70
5
Comprehensive investigation of gene mutations in canine large cell gastrointestinal lymphoma.
PMID: 40046420
Front Vet Sci · 2025
0.60