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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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ZMIZ1
zinc finger MIZ-type containing 1
Chromosome 10 Β· 10q22.3
NCBI Gene: 57178Ensembl: ENSG00000108175.20HGNC: HGNC:16493UniProt: A0JLS3
88PubMed Papers
21Diseases
0Drugs
57Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
positive regulation of transcription by RNA polymerase IISMAD protein signal transductiontransforming growth factor beta receptor signaling pathwaynucleoplasmneurodevelopmental disorder with dysmorphic facies and distal skeletal anomaliesprostate carcinomacolorectal cancerbreast carcinoma
✦AI Summary

ZMIZ1 encodes a zinc finger transcriptional coactivator that regulates multiple signaling pathways critical for development and immune function. As a member of the PIAS protein family, ZMIZ1 enhances transcriptional activity through sumoylation-dependent mechanisms, particularly for the androgen receptor and NOTCH1 target genes including MYC 1. ZMIZ1 also functions as a coactivator in TGF-Ξ² signaling by increasing SMAD3/SMAD4 complex activity and regulates pyramidal neuron positioning during cerebral cortex development 1. In lymphatic endothelial cells, ZMIZ1 modulates Prox1 expression through chr10 remodeling, controlling proliferation, migration, and valve formation 2. During intrahepatic cholangiocarcinoma progression, ZMIZ1 acts as a core transcription factor in stress-responding tumor cells, with Zmiz1 knockout blocking disease initiation 3. Pathogenic ZMIZ1 variants cause neurodevelopmental disorder with dysmorphic facies and distal skeletal anomalies (NEDDFSA), characterized by intellectual disability, growth failure, microcephaly, and facial dysmorphism 1. In vivo, mutant ZMIZ1 alleles impair pyramidal neuron morphology and positioning 1. Additionally, ZMIZ1 variants associate with increased IgA nephropathy risk and celiac disease susceptibility across multiple populations 45. Some ZMIZ1-related neurodevelopmental disorders demonstrate incomplete penetrance 6.

Sources cited
1
ZMIZ1 variants cause syndromic neurodevelopmental disorder with intellectual disability, growth failure, microcephaly, and dysmorphic features; mutant alleles impair pyramidal neuron development
PMID: 30639322
2
ZMIZ1 regulates lymphatic endothelial cell function and Prox1 expression through chromatin accessibility modulation, controlling proliferation and valve formation
PMID: 38718095
3
ZMIZ1 is a core transcription factor in stress-responding intrahepatic cholangiocarcinoma cells; knockout blocks ICC initiation and progression
PMID: 35340039
4
ZMIZ1 variants associate with genome-wide significant IgA nephropathy risk loci
PMID: 37337107
5
ZMIZ1 genetic variants influence celiac disease risk in multiple populations
PMID: 39062631
6
ZMIZ1-related neurodevelopmental disorders can demonstrate incomplete penetrance with variants inherited from asymptomatic parents
PMID: 38453051
Disease Associationsβ“˜21
neurodevelopmental disorder with dysmorphic facies and distal skeletal anomaliesOpen Targets
0.76Strong
prostate carcinomaOpen Targets
0.54Moderate
colorectal cancerOpen Targets
0.54Moderate
breast carcinomaOpen Targets
0.53Moderate
Abnormality of the skeletal systemOpen Targets
0.52Moderate
type 2 diabetes mellitusOpen Targets
0.52Moderate
breast cancerOpen Targets
0.51Moderate
genetic disorderOpen Targets
0.51Moderate
Intellectual disabilityOpen Targets
0.50Moderate
diabetes mellitusOpen Targets
0.50Moderate
atrial fibrillationOpen Targets
0.49Moderate
hair colorOpen Targets
0.47Moderate
complex neurodevelopmental disorderOpen Targets
0.46Moderate
colon carcinomaOpen Targets
0.43Moderate
benign colon neoplasmOpen Targets
0.42Moderate
microcephalyOpen Targets
0.42Moderate
Global developmental delayOpen Targets
0.42Moderate
Abnormality of the cardiovascular systemOpen Targets
0.42Moderate
Abnormality of the urinary systemOpen Targets
0.42Moderate
Feeding difficultiesOpen Targets
0.42Moderate
Neurodevelopmental disorder with dysmorphic facies and distal skeletal anomaliesUniProt
Pathogenic Variants57
NM_020338.4(ZMIZ1):c.2019+1G>APathogenic
Neurodevelopmental disorder with dysmorphic facies and distal skeletal anomalies|not provided
β˜…β˜…β˜†β˜†2025
NM_020338.4(ZMIZ1):c.1557dup (p.Met520fs)Pathogenic
Neurodevelopmental disorder with dysmorphic facies and distal skeletal anomalies|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 520
NM_020338.4(ZMIZ1):c.2835+2_2835+3delPathogenic
not provided|Neurodevelopmental disorder with dysmorphic facies and distal skeletal anomalies
β˜…β˜…β˜†β˜†2024
NM_020338.4(ZMIZ1):c.899C>T (p.Thr300Met)Pathogenic
Neurodevelopmental disorder with dysmorphic facies and distal skeletal anomalies|Syndromic neurodevelopmental disorder|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 300
NM_020338.4(ZMIZ1):c.2758dup (p.Gln920fs)Pathogenic
not provided|Syndromic neurodevelopmental disorder
β˜…β˜…β˜†β˜†2023β†’ Residue 920
NM_020338.4(ZMIZ1):c.253C>T (p.Arg85Ter)Pathogenic
Neurodevelopmental abnormality|not provided|Neurodevelopmental disorder with dysmorphic facies and distal skeletal anomalies
β˜…β˜…β˜†β˜†2023β†’ Residue 85
NM_020338.4(ZMIZ1):c.3042dup (p.Glu1015fs)Likely pathogenic
Inborn genetic diseases|not provided
β˜…β˜…β˜†β˜†2021β†’ Residue 1015
NM_020338.4(ZMIZ1):c.1491+2T>ALikely pathogenic
not provided
β˜…β˜†β˜†β˜†2025
NM_020338.4(ZMIZ1):c.858_878dup (p.Ala293_Thr294insAlaValAlaAlaAlaAlaAla)Likely pathogenic
Neurodevelopmental disorder with dysmorphic facies and distal skeletal anomalies
β˜…β˜†β˜†β˜†2025β†’ Residue 293
NM_020338.4(ZMIZ1):c.958-1G>ALikely pathogenic
not provided
β˜…β˜†β˜†β˜†2025
NM_020338.4(ZMIZ1):c.2610C>T (p.Ser870=)Likely pathogenic
Syndromic neurodevelopmental disorder|not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 870
NM_020338.4(ZMIZ1):c.1492-1G>CLikely pathogenic
Neurodevelopmental disorder with dysmorphic facies and distal skeletal anomalies
β˜…β˜†β˜†β˜†2025
NM_020338.4(ZMIZ1):c.881C>T (p.Thr294Ile)Pathogenic
Neurodevelopmental disorder with dysmorphic facies and distal skeletal anomalies
β˜…β˜†β˜†β˜†2025β†’ Residue 294
NM_020338.4(ZMIZ1):c.1664del (p.Pro555fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 555
NM_020338.4(ZMIZ1):c.40C>T (p.Arg14Ter)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2025β†’ Residue 14
NM_020338.4(ZMIZ1):c.2614del (p.Tyr872fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 872
NM_020338.4(ZMIZ1):c.1147C>T (p.Gln383Ter)Likely pathogenic
Neurodevelopmental disorder with dysmorphic facies and distal skeletal anomalies
β˜…β˜†β˜†β˜†2024β†’ Residue 383
NM_020338.4(ZMIZ1):c.858_878del (p.Ala287_Ala293del)Likely pathogenic
Neurodevelopmental disorder with dysmorphic facies and distal skeletal anomalies
β˜…β˜†β˜†β˜†2024β†’ Residue 287
NM_020338.4(ZMIZ1):c.2354+1G>ALikely pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2024
NM_020338.4(ZMIZ1):c.1230+2T>CLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2024
View on ClinVar β†—
Related Genes
ARProtein interaction80%SUMO1Protein interaction76%NOTCH1Protein interaction75%SUMO2Protein interaction70%ZMIZ2Shared pathway50%NFATC2IPShared pathway17%
Tissue Expression6 tissues
Brain
100%
Ovary
96%
Heart
85%
Lung
82%
Bone Marrow
76%
Liver
33%
Gene Interaction Network
Click a node to explore
ZMIZ1ARSUMO1NOTCH1SUMO2ZMIZ2NFATC2IP
PROTEIN STRUCTURE
Preparing viewer…
PDB5AIZ Β· 1.70 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.22Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.15 [0.10–0.22]
RankingsWhere ZMIZ1 stands among ~20K protein-coding genes
  • #5,456of 20,598
    Most Researched88
  • #1,214of 5,498
    Most Pathogenic Variants57 Β· top quartile
  • #564of 17,882
    Most Constrained (LOEUF)0.22 Β· top 5%
Genes detectedZMIZ1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
ZMIZ1 Variants Cause a Syndromic Neurodevelopmental Disorder.
PMID: 30639322
Am J Hum Genet Β· 2019
1.00
2
Cellular heterogeneity and transcriptomic profiles during intrahepatic cholangiocarcinoma initiation and progression.
PMID: 35340039
Hepatology Β· 2022
0.90
3
Penetrance, variable expressivity and monogenic neurodevelopmental disorders.
PMID: 38453051
Eur J Med Genet Β· 2024
0.80
4
Genome-wide association analyses define pathogenic signaling pathways and prioritize drug targets for IgA nephropathy.
PMID: 37337107
Nat Genet Β· 2023
0.70
5
Zmiz1 is a novel regulator of lymphatic endothelial cell gene expression and function.
PMID: 38718095
PLoS One Β· 2024
0.60