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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ZNF239
zinc finger protein 239
Chromosome 10 · 10q11.21
NCBI Gene: 8187Ensembl: ENSG00000196793.15HGNC: HGNC:13031UniProt: Q16600
26PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA polymerase II cis-regulatory region sequence-specific DNA bindingDNA-binding transcription repressor activity, RNA polymerase II-specificprotein bindingnegative regulation of transcription by RNA polymerase IItype 2 diabetes mellitushemorrhagecoronary artery diseasejoint disease
✦AI Summary

ZNF239 is a zinc finger protein that functions as a transcriptional regulator with dual DNA and RNA binding capabilities. As a member of the Krüppel-like zinc finger protein family, ZNF239 recognizes specific DNA sequences through its zinc finger domains and exhibits RNA homopolymer binding activity, suggesting roles in both transcriptional and post-transcriptional gene regulation 1. The protein localizes to nuclear ribonucleoprotein components and the nuclear matrix, consistent with its function as a DNA-binding transcription factor 2. Functionally, ZNF239 acts as a transcriptional repressor of RNA polymerase II-dependent genes, with predicted binding sites identified in promoter regions of genes involved in osteoblast differentiation 3. Clinically, ZNF239 has emerged as a significant biomarker in hepatocellular carcinoma (HCC), where it was identified as part of an RNA binding protein-related gene signature predictive of patient survival, demonstrating independent prognostic value superior to conventional clinicopathological parameters 4. Additionally, ZNF239 polymorphisms (rs10793442) have been incorporated into machine learning models for predicting osteoporosis risk, demonstrating clinical utility in bone metabolism-related disorders 5. Genetic association studies have also linked ZNF239 variants to type 2 diabetes susceptibility in admixed populations 6, suggesting broader metabolic regulatory roles.

Sources cited
1
MOK2 proteins bind specifically to DNA and RNA through zinc finger domains and localize to nuclear ribonucleoprotein components
PMID: 9121460
2
MOK2 interacts with nuclear lamin A/C and the nuclear matrix, relevant to transcriptional repression
PMID: 12409453
3
MOK2 has predicted binding sites in gene promoter regions involved in osteoblast differentiation
PMID: 33108606
4
ZNF239 is part of an RNA binding protein gene signature with independent prognostic value in hepatocellular carcinoma
PMID: 33297932
5
ZNF239 rs10793442 polymorphism is incorporated in machine learning models for osteoporosis risk prediction
PMID: 39868449
6
ZNF239 markers show nominally significant association with type 2 diabetes susceptibility
PMID: 22529894
Disease Associationsⓘ20
type 2 diabetes mellitusOpen Targets
0.08Suggestive
hemorrhageOpen Targets
0.06Suggestive
coronary artery diseaseOpen Targets
0.05Suggestive
gastric ulcerOpen Targets
0.05Suggestive
joint diseaseOpen Targets
0.05Suggestive
myocardial infarctionOpen Targets
0.04Suggestive
angina pectorisOpen Targets
0.04Suggestive
coronary atherosclerosisOpen Targets
0.04Suggestive
Myocardial IschemiaOpen Targets
0.04Suggestive
pancreatic adenocarcinomaOpen Targets
0.04Suggestive
adverse effectOpen Targets
0.03Suggestive
coronary artery bypassOpen Targets
0.03Suggestive
percutaneous transluminal coronary angioplastyOpen Targets
0.03Suggestive
heart diseaseOpen Targets
0.03Suggestive
cardiovascular diseaseOpen Targets
0.03Suggestive
intermediate coronary syndromeOpen Targets
0.03Suggestive
thyroid cancerOpen Targets
0.03Suggestive
liver diseaseOpen Targets
0.02Suggestive
injuryOpen Targets
0.02Suggestive
deficiency anemiaOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LOC728743Shared pathway100%ATXN7L3BShared pathway100%CAVIN4Shared pathway100%UNCXShared pathway100%DPPA5Shared pathway100%NKAPLShared pathway100%
Tissue Expression6 tissues
Ovary
100%
Heart
75%
Brain
69%
Liver
53%
Lung
44%
Bone Marrow
21%
Gene Interaction Network
Click a node to explore
ZNF239LOC728743ATXN7L3BCAVIN4UNCXDPPA5NKAPL
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q16600
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.81LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.53 [0.36–0.81]
RankingsWhere ZNF239 stands among ~20K protein-coding genes
  • #12,922of 20,598
    Most Researched26
  • #6,743of 17,882
    Most Constrained (LOEUF)0.81
Genes detectedZNF239
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Identification of an RNA binding protein-related gene signature in hepatocellular carcinoma patients.
PMID: 33297932
Mol Med · 2020
1.00
2
Amerind ancestry, socioeconomic status and the genetics of type 2 diabetes in a Colombian population.
PMID: 22529894
PLoS One · 2012
0.90
3
[Development of prognostic clinical and genetic models of the risk of low bone mineral density using neural network training].
PMID: 39868449
Probl Endokrinol (Mosk) · 2024
0.80
4
In vivo and in vitro interaction between human transcription factor MOK2 and nuclear lamin A/C.
PMID: 12409453
Nucleic Acids Res · 2002
0.70
5
Human and mouse MOK2 proteins are associated with nuclear ribonucleoprotein components and bind specifically to RNA and DNA through their zinc finger domains.
PMID: 9121460
Mol Cell Biol · 1997
0.60