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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ZNF354A
zinc finger protein 354A
Chromosome 5 · 5q35.3
NCBI Gene: 6940Ensembl: ENSG00000169131.14HGNC: HGNC:11628UniProt: O60765
24PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleolusnucleoplasmnucleusRNA polymerase II cis-regulatory region sequence-specific DNA bindingalopecia areataglomerulonephritisTietze syndrometrauma complication
✦AI Summary

ZNF354A (zinc finger protein 354A) is a KRAB-zinc finger transcription factor that functions as an epigenetic repressor with significant roles in cellular defense mechanisms and development. The protein contains a Krüppel-associated box (KRAB) domain and belongs to the C2H2 class of zinc finger proteins 1. ZNF354A serves as a key component of the Lipid Oxygen Radical Defense (LORD) pathway, where it forms a repressive complex with KAP1/TRIM28, SETDB1, and ATF2 to epigenetically silence protective genes under normal conditions 2. Upon lipid peroxide accumulation, stress-induced phosphorylation leads to complex disassembly and ZNF354A release from DNA, activating antioxidant gene networks including NRF2 targets 2. The gene shows tissue-specific expression patterns, being expressed in kidney, inner ear structures, and various other tissues 1. ZNF354A is upregulated in testicular germ cell tumors during the precursor intratubular germ cell neoplasia stage 3 and shows altered expression in COVID-19 recovery patients 4. Additionally, genetic variants in ZNF354A are associated with breast cancer risk 5. The gene maps to chromosome 5.3, a region frequently altered in renal cell carcinomas 6.

Sources cited
1
ZNF354A is a component of the LORD pathway epigenetic repressive complex and undergoes phosphorylation-induced release to activate antioxidant genes
PMID: 41372219
2
ZNF354A is a KRAB-zinc finger protein of the C2H2 class expressed in kidney and inner ear
PMID: 9919311
3
ZNF354A is upregulated in testicular germ cell tumor precursor stage
PMID: 15172750
4
ZNF354A shows altered expression in COVID-19 recovery patients
PMID: 38157776
5
Genetic variants in ZNF354A are associated with breast cancer risk
PMID: 35971775
6
ZNF354A maps to chromosome 5q35.3, a region altered in renal cell carcinomas
PMID: 9465904
Disease Associationsⓘ20
alopecia areataOpen Targets
0.27Weak
glomerulonephritisOpen Targets
0.21Weak
Tietze syndromeOpen Targets
0.18Weak
trauma complicationOpen Targets
0.18Weak
Abnormal nasolacrimal system morphologyOpen Targets
0.16Weak
cataractOpen Targets
0.16Weak
Hyperlipoproteinemia type 1Open Targets
0.05Suggestive
polycystic kidney disease 5Open Targets
0.04Suggestive
Senior-Boichis syndromeOpen Targets
0.04Suggestive
schizophreniaOpen Targets
0.04Suggestive
hepatorenocardiac degenerative fibrosisOpen Targets
0.04Suggestive
immunodeficiency 75Open Targets
0.04Suggestive
autoinflammation with episodic fever and lymphadenopathyOpen Targets
0.04Suggestive
fish eye diseaseOpen Targets
0.04Suggestive
Fish-eye diseaseOpen Targets
0.04Suggestive
proteasome-associated autoinflammatory syndrome 5Open Targets
0.04Suggestive
familial apolipoprotein C-II deficiencyOpen Targets
0.03Suggestive
Tyrosinemia type 1Open Targets
0.03Suggestive
familial juvenile hyperuricemic nephropathy type 2Open Targets
0.03Suggestive
Hyperuricemia - anemia - renal failureOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
GRXCR2Shared pathway100%CEACAM16Shared pathway100%LHFPL3Shared pathway100%CCDC50Shared pathway100%OTOSShared pathway100%LOXHD1Shared pathway100%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
84%
Ovary
70%
Heart
65%
Brain
52%
Liver
42%
Gene Interaction Network
Click a node to explore
ZNF354AGRXCR2CEACAM16LHFPL3CCDC50OTOSLOXHD1
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt O60765
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.67LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.49 [0.36–0.67]
RankingsWhere ZNF354A stands among ~20K protein-coding genes
  • #13,357of 20,598
    Most Researched24
  • #4,952of 17,882
    Most Constrained (LOEUF)0.67
Genes detectedZNF354A
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Identification of a lipid oxygen radical defense pathway and its epigenetic control.
PMID: 41372219
Nat Commun · 2025
1.00
2
Chromosomes, genes, and development of testicular germ cell tumors.
PMID: 15172750
Cancer Genet Cytogenet · 2004
0.90
3
PMID: 35971775
Epigenetics · 2022
0.80
4
Fine Mapping Regulatory Variants by Characterizing Native CpG Methylation with Nanopore Long-Read Sequencing.
PMID: 39386487
bioRxiv · 2024
0.70
5
Cloning, expression and mapping of a novel human zinc-finger gene TCF17 homologous to rodent Kid1.
PMID: 9465904
Cytogenet Cell Genet · 1997
0.60