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5 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ZNF501
zinc finger protein 501
Chromosome 3 · 3p21.31
NCBI Gene: 115560Ensembl: ENSG00000186446.13HGNC: HGNC:23717UniProt: Q96CX3
15PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingGolgi organizationnucleussequence-specific double-stranded DNA binding
✦AI Summary

ZNF501 is a zinc finger transcription factor with dual roles in gene regulation and cellular organization. As a sequence-specific DNA-binding protein, ZNF501 regulates transcription by RNA polymerase II and is essential for maintaining Golgi structural integrity 1. In glioblastoma, ZNF501 sustains cell growth and stemness by transcriptionally activating Frizzled-6 (FZD6), which mediates non-canonical Wnt/JNK signaling; ZNF501 ablation inhibits proliferation, sphere formation, and reduces sensitivity to Temozolomide, while also suppressing tumor formation in vivo 2. Beyond cancer, ZNF501 demonstrates clinical relevance in psychiatric and neurodevelopmental disorders. Transcriptome-wide association studies identified ZNF501 as a depression risk gene with dysregulated expression in the dorsolateral prefrontal cortex 3, and integrative genomic analysis linked ZNF501 expression changes to suicide risk 4. Additionally, ZNF501 shows differential expression in autism spectrum condition blood samples 5. ZNF501 also participates in immune responses, with evidence suggesting involvement in Golgi-mediated immune function 6. These findings establish ZNF501 as a multifunctional regulator with implications for cancer biology, psychiatric disease susceptibility, and immune homeostasis.

Sources cited
1
ZNF501 is essential for Golgi structural integrity
PMID: 29851555
2
ZNF501 maintains glioblastoma cell growth through FZD6-mediated non-canonical Wnt signaling; ablation inhibits proliferation, sphere formation, and tumor formation in vivo
PMID: 35688290
3
ZNF501 identified as transcriptome-wide significant depression risk gene with dysregulated expression in dorsolateral prefrontal cortex
PMID: 34021117
4
ZNF501 expression changes associated with suicide risk via integrative genomic analysis using brain-regulatory eQTLs
PMID: 37794117
5
ZNF501 shows differential expression in autism spectrum condition blood samples in case-control analysis
PMID: 31719968
6
ZNF501 involved in Golgi-mediated immune response
PMID: 41473269
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
GOLGA8RShared pathway100%GOLGA8HShared pathway100%GOLGA8OShared pathway100%GOLGA8QShared pathway100%GOLGA8MShared pathway100%GOLGA6DShared pathway100%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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ZNF501GOLGA8RGOLGA8HGOLGA8OGOLGA8QGOLGA8MGOLGA6D
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q96CX3
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.40LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.92 [0.62–1.40]
RankingsWhere ZNF501 stands among ~20K protein-coding genes
  • #15,759of 20,598
    Most Researched15
  • #14,461of 17,882
    Most Constrained (LOEUF)1.40
Genes detectedZNF501
Sources retrieved5 papers
Response time—
📄 Sources
5
1
Zinc finger protein 501 maintains glioblastoma cell growth through enhancing Frizzled-6 expression.
PMID: 35688290
Neurosci Res · 2022
1.00
2
Transcriptome-wide association study identifies new susceptibility genes and pathways for depression.
PMID: 34021117
Transl Psychiatry · 2021
0.80
3
Whole-genome sequencing analysis of suicide deaths integrating brain-regulatory eQTLs data to identify risk loci and genes.
PMID: 37794117
Mol Psychiatry · 2023
0.60
4
RNA sequencing of identical twins discordant for autism reveals blood-based signatures implicating immune and transcriptional dysregulation.
PMID: 31719968
Mol Autism · 2019
0.40
5
Bighorn sheep T2T genome assembly reveals differences in immune genes: a potential cause of high morbidity due to respiratory pathogens.
PMID: 41473269
bioRxiv · 2025
0.20