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3 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ZNF658
zinc finger protein 658
Chromosome 9 · 9q21.11
NCBI Gene: 26149Ensembl: ENSG00000274349.6HGNC: HGNC:25226UniProt: A8K7Y5
19PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
transcription cis-regulatory region bindingribosome biogenesisnegative regulation of DNA-templated transcriptioncellular response to zinc ionMODYmaturity-onset diabetes of the young type 3maturity-onset diabetes of the young type 10hyperproinsulinemia
✦AI Summary

ZNF658 is a zinc-responsive transcriptional repressor that coordinates cellular zinc homeostasis with ribosome biogenesis. The protein contains a KRAB domain and 21 zinc fingers 1, binding to zinc transcriptional regulatory elements (ZTREs) with a consensus sequence of 5'-C[AC]C[TAG]CC[TC]-N(0-50)-[GA]G[ATC]G[TG]G-3' found in gene promoters 2. Upon zinc elevation, ZNF658 represses expression of zinc transporter genes (SLC30A5, SLC30A10) and other zinc homeostasis regulators 1. Critically, ZNF658 regulates ribosomal RNA precursor transcription and ribosomal protein expression by binding ZTREs clustered within the 45S rRNA precursor, functionally linking zinc availability to ribosome production—the cell's most zinc-demanding process 1. The protein exhibits context-dependent binding affinity, potentially suppressing both zinc-compensatory and transcriptional activation genes depending on cellular zinc status 2. Clinically, genomic deletions of ZNF658 are associated with increased risk of arsenic-induced skin lesions in exposed populations, with gender-specific effects, suggesting ZNF658 participates in arsenic toxicity resistance 3. This dual functionality as a zinc-responsive regulator and ribosome biogenesis coordinator positions ZNF658 as a fundamental mediator of cellular zinc-dependent physiology.

Sources cited
1
ZNF658 binds ZTREs and mediates zinc-dependent transcriptional repression of zinc homeostasis genes (SLC30A5, SLC30A10, CBWD); regulates rRNA and ribosomal protein expression
PMID: 25582195
2
ZTRE structure and genomic distribution; potential dual role of ZNF658 with low/high affinity binding; competition with Sp1-like factors
PMID: 30734197
3
ZNF658 genomic deletions associated with arsenic-induced skin lesion risk, with gender-specific effects in males
PMID: 28720099
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
MODYOpen Targets
0.06Suggestive
maturity-onset diabetes of the young type 3Open Targets
0.05Suggestive
maturity-onset diabetes of the young type 10Open Targets
0.04Suggestive
hyperproinsulinemiaOpen Targets
0.04Suggestive
Glycogen storage disease due to hepatic glycogen synthase deficiencyOpen Targets
0.04Suggestive
glycogen storage disorder due to hepatic glycogen synthase deficiencyOpen Targets
0.04Suggestive
diabetes mellitus, permanent neonatal 4Open Targets
0.04Suggestive
maturity-onset diabetes of the young type 13Open Targets
0.03Suggestive
permanent neonatal diabetes mellitus 1Open Targets
0.03Suggestive
diabetes mellitus, transient neonatal, 3Open Targets
0.03Suggestive
breast cancerOpen Targets
0.00Suggestive
cholangiocarcinomaOpen Targets
0.00Suggestive
clear cell renal carcinomaOpen Targets
0.00Suggestive
esophageal cancerOpen Targets
0.00Suggestive
gastric cancerOpen Targets
0.00Suggestive
hepatocellular carcinomaOpen Targets
0.00Suggestive
ovarian serous cystadenocarcinomaOpen Targets
0.00Suggestive
sarcomaOpen Targets
0.00Suggestive
ThymomaOpen Targets
0.00Suggestive
uterine corpus endometrial carcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
RBISShared pathway50%DDX31Shared pathway50%TSR1Shared pathway33%URB2Shared pathway33%BYSLShared pathway33%GAR1Shared pathway25%
Tissue Expression6 tissues
Heart
100%
Ovary
78%
Brain
55%
Liver
39%
Bone Marrow
34%
Lung
24%
Gene Interaction Network
Click a node to explore
ZNF658RBISDDX31TSR1URB2BYSLGAR1
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q5TYW1
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.95LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.74 [0.57–0.95]
RankingsWhere ZNF658 stands among ~20K protein-coding genes
  • #14,615of 20,598
    Most Researched19
  • #8,868of 17,882
    Most Constrained (LOEUF)0.95
Genes detectedZNF658
Sources retrieved3 papers
Response time—
📄 Sources
3
1
Association between genome-wide copy number variation and arsenic-induced skin lesions: a prospective study.
PMID: 28720099
Environ Health · 2017
1.00
2
Genomic Characterization of the Zinc Transcriptional Regulatory Element Reveals Potential Functional Roles of ZNF658.
PMID: 30734197
Biol Trace Elem Res · 2019
0.67
3
The zinc finger protein ZNF658 regulates the transcription of genes involved in zinc homeostasis and affects ribosome biogenesis through the zinc transcriptional regulatory element.
PMID: 25582195
Mol Cell Biol · 2015
0.33