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7 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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ZSCAN23
zinc finger and SCAN domain containing 23
Chromosome 6 · 6p22.1
NCBI Gene: 222696Ensembl: ENSG00000187987.11HGNC: HGNC:21193UniProt: Q3MJ62
16PubMed Papers
15Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
sequence-specific double-stranded DNA bindingprotein bindingRNA polymerase II cis-regulatory region sequence-specific DNA bindingregulation of transcription by RNA polymerase IIneoplasmglioblastoma multiformeepilepsyschizophrenia
✦AI Summary

ZSCAN23 is a zinc finger transcription factor with DNA-binding and RNA polymerase II-specific transcriptional regulatory activity. It functions as a tumor suppressor in pancreatic ductal adenocarcinoma (PDAC), where it is frequently silenced through promoter methylation (60.21% of cases) 1. ZSCAN23 expression inhibits cancer cell proliferation, colony formation, migration, and invasion while inducing apoptosis and G1/S cell cycle arrest 1. Mechanistically, it suppresses Wnt signaling by interacting with myosin heavy chain 9 (MYH9) 1, and suppresses PDAC xenograft growth in vivo 1. ZSCAN23 also shows clinical significance for human longevity, with common variants at the ZSCAN23 locus associated with lifespan in UK Biobank analyses 23. Additionally, ZSCAN23 was identified as a pleiotropic gene shared between epilepsy and psychiatric disorders, particularly implicated in MAPK signaling pathways 4. The gene has also been detected as a somatic mutation in thyrotropin-secreting pituitary adenomas, though with unknown functional role in this context 5. ZSCAN23 represents a potential biomarker for PDAC diagnosis and a therapeutic target for cancer suppression.

Sources cited
1
ZSCAN23 is methylated in 60.21% of PDAC, inhibits cell proliferation and induces apoptosis, suppresses Wnt signaling via MYH9 interaction, and suppresses tumor growth in vivo
PMID: 38226836
2
ZSCAN23 is a longevity-associated locus identified in UK Biobank survival analysis with common variant associations
PMID: 39132489
3
ZSCAN23 is identified as a lifespan-associated locus in UK Biobank with cancer-driven associations
PMID: 40021682
4
ZSCAN23 is a pleiotropic gene shared between epilepsy and psychiatric disorders, involved in MAPK signaling pathway
PMID: 41733899
5
ZSCAN23 was identified as a somatic mutation candidate in thyrotropin-secreting pituitary adenomas
PMID: 27854551
Disease Associationsⓘ15
neoplasmOpen Targets
0.03Suggestive
glioblastoma multiformeOpen Targets
0.01Suggestive
epilepsyOpen Targets
0.01Suggestive
schizophreniaOpen Targets
0.00Suggestive
cancerOpen Targets
0.00Suggestive
gliomaOpen Targets
0.00Suggestive
mood disorderOpen Targets
0.00Suggestive
Lyme diseaseOpen Targets
0.00Suggestive
acute myeloid leukemiaOpen Targets
0.00Suggestive
psychiatric disorderOpen Targets
0.00Suggestive
Sjogren syndromeOpen Targets
0.00Suggestive
diffuse large B-cell lymphomaOpen Targets
0.00Suggestive
Hereditary breast cancerOpen Targets
0.00Suggestive
hereditary breast carcinomaOpen Targets
0.00Suggestive
thyroid cancer, nonmedullary, 1Open Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ZSCAN32Protein interaction82%ZSCAN20Protein interaction79%ZSCAN21Protein interaction76%
Tissue Expression6 tissues
Ovary
100%
Heart
53%
Brain
42%
Bone Marrow
17%
Lung
14%
Liver
5%
Gene Interaction Network
Click a node to explore
ZSCAN23ZSCAN32ZSCAN20ZSCAN21
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q3MJ62
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.35LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.93 [0.65–1.35]
RankingsWhere ZSCAN23 stands among ~20K protein-coding genes
  • #15,474of 20,598
    Most Researched16
  • #14,130of 17,882
    Most Constrained (LOEUF)1.35
Genes detectedZSCAN23
Sources retrieved7 papers
Response time—
📄 Sources
7▼
1
Epigenetic silencing
PMID: 38226836
Cancer Biol Ther · 2024
1.00
2
Rare genetic associations with human lifespan in UK Biobank are enriched for oncogenic genes.
PMID: 40021682
Nat Commun · 2025
0.86
3
Whole-Exome Sequencing Study of Thyrotropin-Secreting Pituitary Adenomas.
PMID: 27854551
J Clin Endocrinol Metab · 2017
0.71
4
Associations between antenatal maternal asthma status and placental DNA methylation.
PMID: 35858526
Placenta · 2022
0.57
5
Genetic associations with human longevity are enriched for oncogenic genes.
PMID: 39132489
medRxiv · 2024
0.43