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GeneE
7 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ZSCAN20
zinc finger and SCAN domain containing 20
Chromosome 1 · 1p35.1
NCBI Gene: 7579Ensembl: ENSG00000121903.16HGNC: HGNC:13093UniProt: P17040
18PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingnucleusDNA-binding transcription factor activity, RNA polymerase II-specificRNA polymerase II cis-regulatory region sequence-specific DNA bindingBrugada syndromehemolytic anemiaalbuminuriahepatocellular carcinoma
✦AI Summary

ZSCAN20 is a zinc finger transcription factor with emerging roles in immune regulation and disease pathogenesis. Primary function: ZSCAN20 acts as a DNA-binding transcription factor with RNA polymerase II-specific activity 1. Mechanism: Recently discovered as a TEXterm-selective transcription factor, ZSCAN20 promotes terminal exhaustion of CD8+ T cells, a dysfunctional state characterized by upregulation of inhibitory receptors 1. Targeted deletion of ZSCAN20 in T cells reduces inhibitory receptor expression and improves effector function, while enhancing tumor control and synergizing with immune checkpoint blockade 1. Disease relevance: ZSCAN20 has been implicated in multiple conditions including hepatocellular carcinoma, where elevated expression correlates with poor prognosis and associates with cell cycle progression, immune infiltration, and m6A RNA modifications 2. ZSCAN20 variants also show suggestive associations with circulating fibroblast growth factor 21 levels 3 and sex-specific association with diabetic neuropathic pain susceptibility 4. Clinical significance: As an independent prognostic biomarker in hepatocellular carcinoma 2, ZSCAN20 represents a potential therapeutic target for enhancing anti-tumor immunity through T cell engineering and may inform stratification strategies in cancer immunotherapy.

Sources cited
1
ZSCAN20 is a TEXterm-selective transcription factor that promotes CD8+ T cell exhaustion; its deletion enhances tumor control and reduces inhibitory receptor expression
PMID: 41639465
2
ZSCAN20 is upregulated in hepatocellular carcinoma, acts as an independent prognostic factor, and associates with cell cycle, immune infiltration, and m6A modifications
PMID: 36462500
3
SNP rs12565114 located between PHC2-ZSCAN20 shows suggestive association with circulating FGF21 levels
PMID: 32884031
4
ZSCAN20-TLR12P locus at Chr1p35.1 shows sex-specific association with diabetic neuropathic pain susceptibility in females
PMID: 26629533
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
Brugada syndromeOpen Targets
0.30Weak
hemolytic anemiaOpen Targets
0.25Weak
albuminuriaOpen Targets
0.09Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
injuryOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.06Suggestive
cervical carcinomaOpen Targets
0.05Suggestive
Conductive hearing impairmentOpen Targets
0.04Suggestive
risk-taking behaviourOpen Targets
0.03Suggestive
Cannabis useOpen Targets
0.02Suggestive
breast cancerOpen Targets
0.02Suggestive
strictureOpen Targets
0.02Suggestive
attention deficit hyperactivity disorderOpen Targets
0.02Suggestive
substance abuseOpen Targets
0.02Suggestive
schizophreniaOpen Targets
0.02Suggestive
smoking initiationOpen Targets
0.02Suggestive
smoking behaviorOpen Targets
0.02Suggestive
osteitis deformansOpen Targets
0.02Suggestive
cancerOpen Targets
0.01Suggestive
gliomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SCAND1Protein interaction84%ZSCAN18Protein interaction83%ZNF396Protein interaction83%ZSCAN32Protein interaction83%ZNF197Protein interaction80%ZNF394Protein interaction80%
Tissue Expression6 tissues
Heart
100%
Ovary
57%
Brain
42%
Lung
28%
Liver
22%
Bone Marrow
10%
Gene Interaction Network
Click a node to explore
ZSCAN20SCAND1ZSCAN18ZNF396ZSCAN32ZNF197ZNF394
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt P17040
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.51Moderately Constrained
pLIⓘ
0.83Intermediate
Observed/Expected LoF0.39 [0.30–0.51]
RankingsWhere ZSCAN20 stands among ~20K protein-coding genes
  • #14,904of 20,598
    Most Researched18
  • #3,084of 17,882
    Most Constrained (LOEUF)0.51 · top quartile
Genes detectedZSCAN20
Sources retrieved7 papers
Response time—
📄 Sources
7▼
1
Atlas-Guided Discovery of Transcription Factors for T Cell Programming.
PMID: 36711632
bioRxiv · 2025
1.00
2
Atlas-guided discovery of transcription factors for T cell programming.
PMID: 41639465
Nature · 2026
0.86
3
Brugada syndrome in Japan and Europe: a genome-wide association study reveals shared genetic architecture and new risk loci.
PMID: 38747976
Eur Heart J · 2024
0.71
4
A Novel 10-Gene Signature Predicts Poor Prognosis in Low Grade Glioma.
PMID: 33550903
Technol Cancer Res Treat · 2021
0.57
5
Genome-wide association study for circulating fibroblast growth factor 21 and 23.
PMID: 32884031
Sci Rep · 2020
0.43