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5 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ZNF394
zinc finger protein 394
Chromosome 7 · 7q22.1
NCBI Gene: 84124Ensembl: ENSG00000160908.16HGNC: HGNC:18832UniProt: Q53GI3
15PubMed Papers
19Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleoplasmprotein bindingnucleusDNA-binding transcription factor activity, RNA polymerase II-specificattention deficit hyperactivity disordersubstance abusetemporomandibular joint disordersmoking initiation
✦AI Summary

ZNF394 is a KRAB-containing zinc finger transcription factor located on chromosome 7.21 that functions as a transcriptional regulator with tissue-specific expression patterns and emerging roles in developmental and disease processes. Structurally, ZNF394 contains an N-terminal leucine-rich region (SCAN domain), a krüppel-associated box (KRAB) domain, and seven C2H2 zinc finger motifs at its C-terminus 1. The protein localizes to the cell nucleus where it exhibits sequence-specific DNA binding activity 1. ZNF394 functions as a transcriptional repressor in mitogen-activated protein kinase signaling pathways, inhibiting the transcriptional activities of c-Jun and AP-1 1. In developmental contexts, ZNF394 plays a critical role in major zygotic genome activation during human early embryogenesis; simultaneous knockdown of ZNF394 and ZIM3 arrests human embryo development prior to the eight-cell stage, while overexpression activates totipotent features in human extended pluripotent stem cells 2. ZNF394 expression is tissue-restricted, being specifically detected in heart, skeletal muscle, and brain 1. Clinically, ZNF394 emerged as a positive prognostic factor in stage I lung squamous cell carcinoma, contributing to a 12-gene prognostic model for risk stratification 3. Additionally, ZNF394 was identified as a key transcription factor in gene regulatory networks associated with total fertilization failure, suggesting involvement in reproductive processes 4.

Sources cited
1
ZNF394 protein structure (SCAN domain, KRAB domain, seven C2H2 zinc finger motifs), nuclear localization, tissue expression (heart, skeletal muscle, brain), and function as transcriptional repressor of c-Jun and AP-1
PMID: 15249231
2
ZNF394 role in major zygotic genome activation, requirement for human embryo development progression to eight-cell stage, activation of totipotent features in pluripotent stem cells
PMID: 40674211
3
ZNF394 identified as positive prognostic factor in 12-gene signature for stage I lung squamous cell carcinoma survival prediction
PMID: 34028782
4
ZNF394 identified as key transcription factor in gene regulatory networks associated with total fertilization failure
PMID: 41188932
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ19
attention deficit hyperactivity disorderOpen Targets
0.04Suggestive
substance abuseOpen Targets
0.03Suggestive
temporomandibular joint disorderOpen Targets
0.03Suggestive
smoking initiationOpen Targets
0.02Suggestive
obesityOpen Targets
0.02Suggestive
systemic juvenile idiopathic arthritisOpen Targets
0.01Suggestive
connective tissue diseaseOpen Targets
0.00Suggestive
neoplasmOpen Targets
0.00Suggestive
acute myeloid leukemiaOpen Targets
0.00Suggestive
multiple myelomaOpen Targets
0.00Suggestive
colorectal adenocarcinomaOpen Targets
0.00Suggestive
diffuse large B-cell lymphomaOpen Targets
0.00Suggestive
esophageal cancerOpen Targets
0.00Suggestive
gastric cancerOpen Targets
0.00Suggestive
ovarian serous cystadenocarcinomaOpen Targets
0.00Suggestive
thyroid cancer, nonmedullary, 1Open Targets
0.00Suggestive
urinary bladder cancerOpen Targets
0.00Suggestive
urinary bladder carcinomaOpen Targets
0.00Suggestive
uterine corpus endometrial carcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ZSCAN20Protein interaction80%SCAND1Protein interaction80%ZSCAN32Protein interaction80%ZNF397Protein interaction80%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
21%
Ovary
17%
Heart
12%
Liver
11%
Brain
7%
Gene Interaction Network
Click a node to explore
ZNF394ZSCAN20SCAND1ZSCAN32ZNF397
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q53GI3
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.24LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.86 [0.61–1.24]
RankingsWhere ZNF394 stands among ~20K protein-coding genes
  • #15,754of 20,598
    Most Researched15
  • #13,100of 17,882
    Most Constrained (LOEUF)1.24
Genes detectedZNF394
Sources retrieved5 papers
Response time—
📄 Sources
5
1
CRISPR-based screening identifies the role of KRAB-containing transcription factors ZIM3 and ZNF394 in human major zygotic genome activation.
PMID: 40674211
Cell Rep · 2025
1.00
2
Inhibition of transcriptional activities of AP-1 and c-Jun by a new zinc finger protein ZNF394.
PMID: 15249231
Biochem Biophys Res Commun · 2004
0.80
3
Mutational disruption of transcription factors binding and regulatory networks in a case of unexplained total fertilization failure.
PMID: 41188932
J Transl Med · 2025
0.60
4
Screening, identification, and experimental validation of SUMOylation biomarkers in Parkinson's disease.
PMID: 40781725
Hereditas · 2025
0.40
5
A novel 12-gene signature as independent prognostic model in stage IA and IB lung squamous cell carcinoma patients.
PMID: 34028782
Clin Transl Oncol · 2021
0.20