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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SCAND1
SCAN domain containing 1
Chromosome 20 · 20q11.23
NCBI Gene: 51282Ensembl: ENSG00000171222.12HGNC: HGNC:10566UniProt: P57086
32PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingnucleusskin cancercutaneous melanomaAbnormality of the skeletal systembasal cell carcinoma
✦AI Summary

SCAND1 (SCAN domain containing 1) is a transcriptional co-regulator that functions as a SCAN domain-only protein capable of hetero-oligomerizing with SCAN-zinc finger transcription factors like MZF1 to access DNA and mediate transcriptional co-repression 1. At the molecular level, SCAND1 heterodimerizes with zinc finger proteins through its SCAN domain 2 and coordinately binds chr20 with heterochromatin protein HP1γ 3. Clinically, SCAND1 exhibits tumor-suppressive properties, particularly in prostate cancer where it reverses epithelial-to-mesenchymal transition (EMT) by suppressing EMT driver genes (ZEB1/2, CTNNB1, TGFBRs) and inhibiting MAP3K-MEK-ERK signaling, thereby reducing proliferation, migration, and lymph node metastasis 3. As a stress-inducible factor, SCAND1 suppresses excessive heat shock responses by co-repressing HSP90 gene expression, functioning as a negative feedback regulator of cellular stress 1. High SCAND1 expression correlates with improved prognoses in pancreatic and head/neck cancers, and potentially in lung adenocarcinoma 1. Additionally, SCAND1 was identified as a component of prognostic models for non-small cell lung cancer 4 and breast cancer 5, indicating its value as a prognostic biomarker. A genetic variant near SCAND1 shows association with plasma HDL cholesterol levels 6.

Sources cited
1
SCAND1 is a SCAN domain protein that hetero-oligomerizes with MZF1, represses stress response and HSP90 expression, and high expression correlates with better prognosis in pancreatic and head/neck cancers
PMID: 36982267
2
SCAND1 is a truncated SCAN box protein capable of forming heterodimers with other SCAN domain-containing proteins through its SCAN domain
PMID: 16540086
3
SCAND1 reverses EMT, suppresses EMT driver genes and MAP3K-MEK-ERK signaling, reduces prostate cancer proliferation and metastasis, and correlates with better prognosis in some cancer types
PMID: 36552758
4
SCAND1 was identified as one of 10 significant risk genes in a cuproptosis-related prognostic prediction model for non-small cell lung cancer
PMID: 40008552
5
SCAND1 was selected as one of 7 prognostic genes in a disulfidptosis-associated prognostic model for breast cancer with validated expression in tumor tissue
PMID: 38116315
6
A SNP near SCAND1 (rs6060717) was associated with plasma HDL cholesterol levels
PMID: 18660489
Disease Associationsⓘ20
skin cancerOpen Targets
0.32Weak
cutaneous melanomaOpen Targets
0.28Weak
Abnormality of the skeletal systemOpen Targets
0.20Weak
basal cell carcinomaOpen Targets
0.20Weak
osteoarthritis, kneeOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.08Suggestive
total knee arthroplastyOpen Targets
0.08Suggestive
metabolic syndromeOpen Targets
0.07Suggestive
osteoarthritis, hipOpen Targets
0.07Suggestive
skin neoplasmOpen Targets
0.07Suggestive
vertebral joint diseaseOpen Targets
0.06Suggestive
prostate cancerOpen Targets
0.06Suggestive
attention deficit hyperactivity disorderOpen Targets
0.05Suggestive
skin diseaseOpen Targets
0.05Suggestive
colorectal carcinomaOpen Targets
0.05Suggestive
self-injurious ideationOpen Targets
0.05Suggestive
squamous cell carcinomaOpen Targets
0.05Suggestive
actinic keratosisOpen Targets
0.04Suggestive
hereditary attention deficit-hyperactivity disorderOpen Targets
0.04Suggestive
cardioembolic strokeOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ZKSCAN4Protein interaction84%ZSCAN20Protein interaction84%ZNF174Protein interaction84%PGBD1Protein interaction84%ZSCAN18Protein interaction83%ZNF396Protein interaction83%
Tissue Expression6 tissues
Liver
100%
Lung
62%
Ovary
61%
Brain
47%
Bone Marrow
40%
Heart
12%
Gene Interaction Network
Click a node to explore
SCAND1ZKSCAN4ZSCAN20ZNF174PGBD1ZSCAN18ZNF396
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt P57086
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.95LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.69 [0.81–1.95]
RankingsWhere SCAND1 stands among ~20K protein-coding genes
  • #11,608of 20,598
    Most Researched32
  • #17,643of 17,882
    Most Constrained (LOEUF)1.95
Genes detectedSCAND1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Integrative Analysis of Cuproptosis-Related Mitochondrial Depolarisation Genes for Prognostic Prediction in Non-Small Cell Lung Cancer.
PMID: 40008552
J Cell Mol Med · 2025
1.00
2
Stress-Inducible SCAND Factors Suppress the Stress Response and Are Biomarkers for Enhanced Prognosis in Cancers.
PMID: 36982267
Int J Mol Sci · 2023
0.90
3
Multiple genetic variants along candidate pathways influence plasma high-density lipoprotein cholesterol concentrations.
PMID: 18660489
J Lipid Res · 2008
0.80
4
SCAND1 Reverses Epithelial-to-Mesenchymal Transition (EMT) and Suppresses Prostate Cancer Growth and Migration.
PMID: 36552758
Cells · 2022
0.70
5
Spectroscopic characterization of the tumor antigen NY-REN-21 and identification of heterodimer formation with SCAND1.
PMID: 16540086
Biochem Biophys Res Commun · 2006
0.60