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5 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ZNF397
zinc finger protein 397
Chromosome 18 · 18q12.2
NCBI Gene: 84307Ensembl: ENSG00000186812.14HGNC: HGNC:18818UniProt: Q8NF99
26PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingDNA-binding transcription factor activity, RNA polymerase II-specificregulation of transcription by RNA polymerase IIRNA polymerase II cis-regulatory region sequence-specific DNA bindingneurodegenerative diseasemathematical abilitysystemic lupus erythematosusulcerative colitis
✦AI Summary

ZNF397 is a SCAN domain-containing C2H2 zinc finger protein that functions as a transcriptional regulator with context-dependent roles 1. The protein exists in multiple isoforms generated through alternative splicing; the full-length isoform acts as a transcriptional activator, while the N-terminal SCAN domain-only isoforms function as transcriptional repressors 1. ZNF397 localizes to the nucleus and serves as a coactivator of androgen receptor (AR) signaling, essential for maintaining AR-driven luminal lineage transcription in prostate cells 2. Additionally, ZNF397 localizes to centromeres during interphase and early prophase, functioning as an interphase-specific centromere protein, though its centromere function remains incompletely understood 3. In prostate cancer, ZNF397 deficiency promotes lineage plasticity and therapy resistance by enabling TET2-driven epigenetic reprogramming, allowing cancer cells to escape AR-targeted treatments 2. ZNF397 is expressed broadly across tissues with varying transcript isoforms 1, and genetic variants near ZNF397 have been associated with plasma amyloid-beta levels in Alzheimer's disease endophenotype studies 4. ZNF397 is non-essential in mice, suggesting redundant functions in normal development 3.

Sources cited
1
ZNF397 acts as androgen receptor coactivator essential for AR-driven luminal lineage transcription; deficiency promotes TET2-driven lineage plasticity and AR-targeted therapy resistance in prostate cancer
PMID: 38591846
2
ZNF397 is a SCAN domain-containing zinc finger protein with multiple isoforms; full-length isoform is transcriptional activator, SCAN-only isoforms are repressors; expresses in various tissues with nuclear localization
PMID: 12801647
3
ZNF397 localizes to centromeres during interphase and early prophase; SCAN domain necessary for centromere localization; non-essential protein in mice
PMID: 18369653
4
Gene-based analysis identified ZNF397 association with plasma amyloid-beta levels in Alzheimer's disease endophenotype study
PMID: 34002480
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.42Moderate
mathematical abilityOpen Targets
0.16Weak
systemic lupus erythematosusOpen Targets
0.08Suggestive
ulcerative colitisOpen Targets
0.08Suggestive
schizophreniaOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.07Suggestive
prostate cancerOpen Targets
0.07Suggestive
Abnormality of the skeletal systemOpen Targets
0.06Suggestive
intestinal diseaseOpen Targets
0.04Suggestive
atrial fibrillationOpen Targets
0.03Suggestive
liver diseaseOpen Targets
0.02Suggestive
cancerOpen Targets
0.01Suggestive
posterior cortical atrophyOpen Targets
0.01Suggestive
Alzheimer diseaseOpen Targets
0.00Suggestive
colorectal adenocarcinomaOpen Targets
0.00Suggestive
hepatocellular carcinomaOpen Targets
0.00Suggestive
ThymomaOpen Targets
0.00Suggestive
urinary bladder cancerOpen Targets
0.00Suggestive
Uterine CarcinosarcomaOpen Targets
0.00Suggestive
Uveal MelanomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ZNF197Protein interaction80%ZNF394Protein interaction80%ZKSCAN1Protein interaction79%ZNF24Protein interaction79%ZSCAN20Protein interaction79%ZSCAN21Protein interaction79%
Tissue Expression6 tissues
Ovary
100%
Brain
77%
Lung
69%
Liver
69%
Heart
66%
Bone Marrow
29%
Gene Interaction Network
Click a node to explore
ZNF397ZNF197ZNF394ZKSCAN1ZNF24ZSCAN20ZSCAN21
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q8NF99
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.97LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.74 [0.57–0.97]
RankingsWhere ZNF397 stands among ~20K protein-coding genes
  • #12,925of 20,598
    Most Researched26
  • #9,209of 17,882
    Most Constrained (LOEUF)0.97
Genes detectedZNF397
Sources retrieved5 papers
Response time—
📄 Sources
5
1
ZNF397 Deficiency Triggers TET2-Driven Lineage Plasticity and AR-Targeted Therapy Resistance in Prostate Cancer.
PMID: 38591846
Cancer Discov · 2024
1.00
2
Identification and characterization of two novel human SCAN domain-containing zinc finger genes ZNF396 and ZNF397.
PMID: 12801647
Gene · 2003
0.80
3
ZNF397, a new class of interphase to early prophase-specific, SCAN-zinc-finger, mammalian centromere protein.
PMID: 18369653
Chromosoma · 2008
0.60
4
Mapping of a gene for alopecia with mental retardation syndrome (APMR3) on chromosome 18q11.2-q12.2.
PMID: 17451405
Ann Hum Genet · 2007
0.40
5
Plasma amyloid β levels are driven by genetic variants near APOE, BACE1, APP, PSEN2: A genome-wide association study in over 12,000 non-demented participants.
PMID: 34002480
Alzheimers Dement · 2021
0.20