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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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ZKSCAN1
zinc finger with KRAB and SCAN domains 1
Chromosome 7 · 7q22.1
NCBI Gene: 7586Ensembl: ENSG00000106261.17HGNC: HGNC:13101UniProt: B3KNP9
61PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingregulation of transcription by RNA polymerase IInucleusDNA-binding transcription factor activity, RNA polymerase II-specificneurodegenerative diseaseAlzheimer diseaselysosomal storage diseaseParkinson disease
✦AI Summary

ZKSCAN1 is a zinc finger transcription factor with dual roles as both a linear mRNA and circular RNA (circZKSCAN1), functioning as a tumor suppressor across multiple cancer types through distinct mechanisms. As linear mRNA, ZKSCAN1 primarily regulates cellular metabolism 1. The circular form, circZKSCAN1, functions as a competing endogenous RNA (ceRNA) that sponges microRNAs to modulate cancer-related signaling pathways 1. In hepatocellular carcinoma (HCC), circZKSCAN1 encodes a secretory peptide (circZKSaa) that suppresses tumor progression by promoting mTOR ubiquitination via FBXW7, thereby inhibiting the PI3K/AKT/mTOR pathway and sensitizing cells to sorafenib 2. In bladder cancer, circ-ZKSCAN1 acts as a miR-1178-3p sponge to upregulate p21 expression, suppressing proliferation and invasion 3. Conversely, in lung adenocarcinoma, circ-ZKSCAN1 promotes chemotherapy resistance by sponging miR-185-5p to upregulate TAGLN2 4. Clinically, low ZKSCAN1 expression correlates with poor prognosis in HCC and bladder cancer, with circZKSCAN1 levels predictive of recurrence, vascular invasion, and tumor grade 135. Additionally, ZKSCAN1 represents a noncanonical tumor-associated antigen with therapeutic immunotherapy potential 6.

Sources cited
1
ZKSCAN1 mRNA regulates cellular metabolism while circZKSCAN1 mediates cancer-related signaling pathways; both forms suppress HCC progression
PMID: 28211215
2
circZKSCAN1 encodes circZKSaa peptide that inhibits HCC by promoting mTOR ubiquitination and sensitizes cells to sorafenib
PMID: 36691031
3
circ-ZKSCAN1 acts as tumor suppressor in bladder cancer via miR-1178-3p/p21 axis; associated with recurrence and survival
PMID: 31481066
4
circ-ZKSCAN1 promotes lung adenocarcinoma progression and chemotherapy resistance via miR-185-5p/TAGLN2 axis
PMID: 37105934
5
circ-ZKSCAN1 downregulation in bladder cancer associated with better clinicopathological features and prognosis
PMID: 33030352
6
ZKSCAN1 contains noncanonical tumor-associated ligands that are targets for immunotherapy
PMID: 36749875
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.41Moderate
Alzheimer diseaseOpen Targets
0.38Weak
lysosomal storage diseaseOpen Targets
0.38Weak
multiple sclerosisOpen Targets
0.38Weak
Parkinson diseaseOpen Targets
0.38Weak
idiopathic pulmonary fibrosisOpen Targets
0.14Weak
coronary artery diseaseOpen Targets
0.12Weak
respiratory system diseaseOpen Targets
0.12Weak
Intellectual disabilityOpen Targets
0.12Weak
prostate cancerOpen Targets
0.11Weak
Familial prostate cancerOpen Targets
0.11Weak
interstitial lung diseaseOpen Targets
0.10Suggestive
hypertensionOpen Targets
0.09Suggestive
response to xenobiotic stimulusOpen Targets
0.09Suggestive
COVID-19Open Targets
0.09Suggestive
gastric cancerOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
lung adenocarcinomaOpen Targets
0.07Suggestive
breast cancerOpen Targets
0.07Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.07Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ZSCAN32Protein interaction84%NOX4Protein interaction83%ZNF397Protein interaction79%ZKSCAN4Protein interaction76%ZNF24Protein interaction71%SCAND1Protein interaction71%
Tissue Expression6 tissues
Liver
100%
Brain
43%
Ovary
32%
Heart
27%
Lung
21%
Bone Marrow
13%
Gene Interaction Network
Click a node to explore
ZKSCAN1ZSCAN32NOX4ZNF397ZKSCAN4ZNF24SCAND1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt P17029
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.41Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.26 [0.17–0.41]
RankingsWhere ZKSCAN1 stands among ~20K protein-coding genes
  • #7,626of 20,598
    Most Researched61
  • #2,144of 17,882
    Most Constrained (LOEUF)0.41 · top quartile
Genes detectedZKSCAN1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Short intronic repeat sequences facilitate circular RNA production.
PMID: 25281217
Genes Dev · 2014
1.00
2
Exploring the Immunogenicity of Noncanonical HLA-I Tumor Ligands Identified through Proteogenomics.
PMID: 36749875
Clin Cancer Res · 2023
0.90
3
A novel polypeptide encoded by the circular RNA ZKSCAN1 suppresses HCC via degradation of mTOR.
PMID: 36691031
Mol Cancer · 2023
0.80
4
ZKSCAN1 gene and its related circular RNA (circZKSCAN1) both inhibit hepatocellular carcinoma cell growth, migration, and invasion but through different signaling pathways.
PMID: 28211215
Mol Oncol · 2017
0.70
5
CircRNA ZKSCAN1 promotes lung adenocarcinoma progression by miR-185-5p/TAGLN2 axis.
PMID: 37105934
Thorac Cancer · 2023
0.60