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GeneE
3 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
ZNF197
zinc finger protein 197
Chromosome 3 Β· 3p21.31
NCBI Gene: 10168Ensembl: ENSG00000186448.16HGNC: HGNC:12988UniProt: O14709
18PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
transcription cis-regulatory region bindingregulation of transcription by RNA polymerase IInucleussequence-specific double-stranded DNA bindingneoplasmlymphomaMiyoshi myopathybreast cancer
✦AI Summary

ZNF197 is a zinc finger transcription factor localized to the nucleus that regulates gene expression through binding to cis-regulatory DNA regions. ZNF197 functions as a transcriptional regulator whose activity can be modulated through alternative splicing; an alternatively spliced isoform (VHLaK) containing KRAB-A and SCAN domains but lacking the characteristic C2H2 zinc fingers serves as a transcriptional repression module that can be recruited by the VHL tumor suppressor to inhibit HIF-1alpha transactivation 1. In placental development, ZNF197 expression is regulated by copper-associated DNA methylation patterns 2. Genes co-expressed with ZNF197 are enriched for those associated with birth weight and growth hormone secretion, suggesting a role in fetal development 2. ZNF197 likely regulates genes involved in copper metabolism and placentation 2. In cancer biology, the lncRNA ZNF197-AS1 (encoded from the ZNF197 locus) acts as a competing endogenous RNA that modulates the miR-425/GABARAPL1 axis in uveal melanoma, suppressing tumor cell proliferation and metastatic potential 3. These findings position ZNF197 as a multifunctional transcriptional regulator with roles spanning normal developmental processes and cancer progression.

Sources cited
1
ZNF197 is a transcription factor whose expression is negatively associated with copper-related DNA methylation in placenta; genes co-expressed with ZNF197 associate with birth weight and growth-related biological processes
PMID: 31462129
2
An alternatively spliced product from the ZNF197 locus (VHLaK) contains KRAB-A and SCAN domains and functions as a transcriptional repression module recruited by pVHL to inhibit HIF-1alpha
PMID: 12682018
3
ZNF197-AS1, a lncRNA from the ZNF197 locus, acts as a competing endogenous RNA sponging miR-425 to upregulate GABARAPL1, suppressing uveal melanoma cell proliferation and metastasis
PMID: 39308299
⚠Limited data available β€” This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜20
neoplasmOpen Targets
0.11Weak
lymphomaOpen Targets
0.08Suggestive
Miyoshi myopathyOpen Targets
0.08Suggestive
breast cancerOpen Targets
0.07Suggestive
ulnar-mammary syndromeOpen Targets
0.06Suggestive
infectionOpen Targets
0.05Suggestive
acute respiratory distress syndromeOpen Targets
0.05Suggestive
lung adenocarcinomaOpen Targets
0.04Suggestive
B-cell non-Hodgkins lymphomaOpen Targets
0.04Suggestive
nasopharyngeal carcinomaOpen Targets
0.03Suggestive
viral diseaseOpen Targets
0.03Suggestive
medullary thyroid gland carcinomaOpen Targets
0.03Suggestive
cancerOpen Targets
0.02Suggestive
teratomaOpen Targets
0.02Suggestive
acute kidney injuryOpen Targets
0.02Suggestive
acute lymphoblastic leukemiaOpen Targets
0.02Suggestive
meningiomaOpen Targets
0.02Suggestive
SepsisOpen Targets
0.02Suggestive
hepatocellular carcinomaOpen Targets
0.02Suggestive
ovarian cancerOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar β†—
Related Genes
ZSCAN32Protein interaction80%ZSCAN20Protein interaction80%ZNF397Protein interaction80%ZNF660-ZNF197Protein interaction73%
Tissue Expression6 tissues
Brain
100%
Heart
81%
Ovary
74%
Liver
56%
Lung
48%
Bone Marrow
27%
Gene Interaction Network
Click a node to explore
ZNF197ZSCAN32ZSCAN20ZNF397ZNF660-ZNF197
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt O14709
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.82LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.55 [0.37–0.82]
RankingsWhere ZNF197 stands among ~20K protein-coding genes
  • #14,884of 20,598
    Most Researched18
  • #6,954of 17,882
    Most Constrained (LOEUF)0.82
Genes detectedZNF197
Sources retrieved3 papers
Response timeβ€”
πŸ“„ Sources
3
1
Copper associates with differential methylation in placentae from two US birth cohorts.
PMID: 31462129
Epigenetics Β· 2020
1.00
2
The VHL protein recruits a novel KRAB-A domain protein to repress HIF-1alpha transcriptional activity.
PMID: 12682018
EMBO J Β· 2003
0.67
3
ZNF197-AS1/miR-425/GABARAPL1 axis: a novel regulatory mechanism in uveal melanoma.
PMID: 39308299
Am J Physiol Cell Physiol Β· 2024
0.33