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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ACBD3
acyl-CoA binding domain containing 3
Chromosome 1 · 1q42.12
NCBI Gene: 64746Ensembl: ENSG00000182827.10HGNC: HGNC:15453UniProt: Q9H3P7
137PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingmembraneprotein kinase A regulatory subunit bindingGolgi apparatuscervical carcinomaCOVID-19cancerbreast cancer
✦AI Summary

ACBD3 (acyl-CoA binding domain containing 3) is a multifunctional scaffolding protein primarily localized to the Golgi apparatus and ER-Golgi contact sites. Its primary function involves organizing membrane trafficking and signaling at the secretory pathway 1. ACBD3 recruits phosphatidylinositol 4-kinase beta (PI4KB) to Golgi and trans-Golgi network membranes, increasing PI4KB enzymatic activity and maintaining essential PI4P pools critical for Golgi function 2. Additionally, ACBD3 acts as an A-kinase anchoring protein, directly interacting with PKA regulatory subunit II at the Golgi to coordinate ER-to-Golgi protein trafficking 3. During viral infections, ACBD3 plays opposing roles depending on the pathogen. For flaviviruses like tick-borne encephalitis virus (TBEV), ACBD3 coordinates ER-Golgi contacts with viral protein NS4B to enable productive infection by facilitating ER remodeling, RNA replication, and virion release 4. In contrast, ACBD3 recruits PI4KB for Aichi virus RNA replication [UniProt annotation]. Clinically, ACBD3 overexpression is associated with poor prognosis across multiple cancers. In breast cancer specifically, elevated ACBD3 correlates with advanced clinicopathological features and reduced relapse-free survival 5, 6. ACBD3 promotes breast cancer stem cell self-renewal through Wnt/β-catenin pathway activation 5, suggesting ACBD3 as a potential therapeutic target 7.

Sources cited
1
ACBD3 overexpression promotes breast cancer cell self-renewal via Wnt/β-catenin signaling and correlates with poor prognosis
PMID: 29307786
2
ACBD3 coordinates ER-Golgi contacts with TBEV NS4B to enable flavivirus replication and virion release
PMID: 40207930
3
ACBD3 is a Golgi-resident signaling molecule involved in multiple biological processes including embryogenesis and cancer
PMID: 20043945
4
ACBD3 recruits and activates PI4KB at Golgi and TGN membranes through direct protein-protein interaction
PMID: 27009356
5
ACBD3 overexpression is highest in breast cancer compared to other cancers and correlates with reduced survival
PMID: 36012147
6
ACBD3 is a multifunctional scaffolding protein organizing membrane domains at Golgi and mitochondria
PMID: 31022988
7
ACBD3 directly interacts with PKA regulatory subunit II to coordinate Golgi-ER retrograde trafficking
PMID: 37044218
8
Pan-cancer analysis identifies ACBD3 as upregulated in multiple cancers with diagnostic and prognostic value
PMID: 38098097
Disease Associationsⓘ20
cervical carcinomaOpen Targets
0.26Weak
COVID-19Open Targets
0.25Weak
cancerOpen Targets
0.09Suggestive
breast cancerOpen Targets
0.09Suggestive
lung cancerOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.06Suggestive
non-small cell lung carcinomaOpen Targets
0.05Suggestive
Adult-onset autosomal recessive sideroblastic anemiaOpen Targets
0.05Suggestive
dehydrated hereditary stomatocytosisOpen Targets
0.04Suggestive
hemoglobin D diseaseOpen Targets
0.04Suggestive
microcytic anemia with liver iron overloadOpen Targets
0.04Suggestive
hemoglobin E diseaseOpen Targets
0.04Suggestive
pancreatic adenocarcinomaOpen Targets
0.03Suggestive
Blackfan-Diamond anemiaOpen Targets
0.03Suggestive
familial pseudohyperkalemiaOpen Targets
0.03Suggestive
overhydrated hereditary stomatocytosisOpen Targets
0.03Suggestive
Congenital intrinsic factor deficiencyOpen Targets
0.03Suggestive
hereditary intrinsic factor deficiencyOpen Targets
0.03Suggestive
hereditary elliptocytosisOpen Targets
0.03Suggestive
gastric cancerOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
BLZF1Protein interaction90%DBIProtein interaction89%TBC1D22AProtein interaction87%GOLGA3Protein interaction86%GOLGB1Protein interaction86%BPNT1Protein interaction85%
Tissue Expression6 tissues
Heart
100%
Bone Marrow
96%
Brain
91%
Lung
70%
Liver
65%
Ovary
59%
Gene Interaction Network
Click a node to explore
ACBD3BLZF1DBITBC1D22AGOLGA3GOLGB1BPNT1
PROTEIN STRUCTURE
Preparing viewer…
PDB5LZ1 · 2.00 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.63LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.46 [0.34–0.63]
RankingsWhere ACBD3 stands among ~20K protein-coding genes
  • #3,360of 20,598
    Most Researched137 · top quartile
  • #4,500of 17,882
    Most Constrained (LOEUF)0.63
Genes detectedACBD3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Overexpressed ACBD3 has prognostic value in human breast cancer and promotes the self-renewal potential of breast cancer cells by activating the Wnt/beta-catenin signaling pathway.
PMID: 29307786
Exp Cell Res · 2018
1.00
2
The ACBD3 protein coordinates ER-Golgi contacts to enable productive TBEV infection.
PMID: 40207930
J Virol · 2025
0.90
3
Acyl-coenzyme A binding domain containing 3 (ACBD3; PAP7; GCP60): an emerging signaling molecule.
PMID: 20043945
Prog Lipid Res · 2010
0.80
4
Structural insights and in vitro reconstitution of membrane targeting and activation of human PI4KB by the ACBD3 protein.
PMID: 27009356
Sci Rep · 2016
0.70
5
ACBD3 Bioinformatic Analysis and Protein Expression in Breast Cancer Cells.
PMID: 36012147
Int J Mol Sci · 2022
0.60