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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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ALKBH4
alkB homolog 4, lysine demethylase
Chromosome 7 · 7q22.1
NCBI Gene: 54784Ensembl: ENSG00000160993.5HGNC: HGNC:21900UniProt: Q9NXW9
28PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
actin bindingprotein binding2-oxoglutarate-dependent dioxygenase activityactomyosin structure organizationnon-small cell lung carcinomaneoplasmcolorectal carcinomagastric cancer
✦AI Summary

ALKBH4 is an Fe(II)- and 2-oxoglutarate-dependent dioxygenase that functions as a dual-substrate demethylase with complex roles in cancer biology 1. The enzyme mediates demethylation of both protein and DNA substrates: it removes monomethyl groups from lysine-84 on actin, regulating actomyosin dynamics during cytokinesis and cell migration, and demethylates N6-methyladenine (6mA) in DNA 2. Mechanistically, ALKBH4 couples substrate oxidation to decarboxylation of 2-oxoglutarate to succinate and requires an intact histidine-carboxylate site for productive Fe binding 1. The protein interacts with transcription-associated proteins and localizes to the nucleus, suggesting involvement in gene expression regulation 3. ALKBH4 also modulates DNA cytosine methylation by regulating DNMT1 protein levels 2. In cancer, ALKBH4 exhibits context-dependent roles: it acts as a tumor suppressor under hypoxic conditions by inhibiting epithelial-mesenchymal transition and metastasis 4, while promoting tumorigenesis in other contexts through mechanisms involving reduced 6mA methylation and inhibition of pyroptosis 56. ALKBH4 is overexpressed in various cancers including lung, gastric, and salivary gland tumors, with potential prognostic significance 78.

Sources cited
1
ALKBH4 is an Fe(II)/2OG-dependent dioxygenase that couples substrate oxidation to decarboxylation of 2-oxoglutarate
PMID: 21166655
2
ALKBH4 demethylates monomethylated lysine-84 on actin and N6-methyladenine in DNA, and modulates DNMT1 expression
PMID: 34951099
3
ALKBH4 interacts with transcription-associated proteins and shows nuclear localization
PMID: 23145062
4
ALKBH4 acts as tumor suppressor under hypoxic conditions by inhibiting EMT and metastasis
PMID: 39400679
5
ALKBH4 promotes arsenic-induced tumorigenesis through reduced 6mA methylation
PMID: 37207134
6
ALKBH4 promotes gastric cancer progression by inhibiting GSDME-induced pyroptosis
PMID: 38902235
7
ALKBH4 is overexpressed in NSCLC and associated with poor prognosis
PMID: 33883577
8
ALKBH4 is overexpressed in salivary gland tumors
PMID: 36459535
Disease Associationsⓘ20
non-small cell lung carcinomaOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.08Suggestive
colorectal carcinomaOpen Targets
0.07Suggestive
gastric cancerOpen Targets
0.07Suggestive
cancerOpen Targets
0.03Suggestive
hepatocellular carcinomaOpen Targets
0.03Suggestive
type 2 diabetes mellitusOpen Targets
0.03Suggestive
lung adenocarcinomaOpen Targets
0.02Suggestive
diabetes mellitusOpen Targets
0.02Suggestive
breast cancerOpen Targets
0.02Suggestive
cardiac arrhythmiaOpen Targets
0.02Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.02Suggestive
adenocarcinomaOpen Targets
0.01Suggestive
colorectal cancerOpen Targets
0.01Suggestive
squamous cell carcinomaOpen Targets
0.01Suggestive
head and neck malignant neoplasiaOpen Targets
0.00Suggestive
adenocarcinoma in situOpen Targets
0.00Suggestive
gastric adenocarcinomaOpen Targets
0.00Suggestive
schizophreniaOpen Targets
0.00Suggestive
lung cancerOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
FRMD3Shared pathway100%EPB41L4AShared pathway100%ALKBH2Protein interaction99%JMJD4Protein interaction97%ALKBH1Protein interaction96%ALKBH6Protein interaction95%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
86%
Liver
85%
Ovary
80%
Heart
76%
Lung
63%
Gene Interaction Network
Click a node to explore
ALKBH4FRMD3EPB41L4AALKBH2JMJD4ALKBH1ALKBH6
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9NXW9
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.03LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.63 [0.39–1.03]
RankingsWhere ALKBH4 stands among ~20K protein-coding genes
  • #12,295of 20,598
    Most Researched28
  • #10,284of 17,882
    Most Constrained (LOEUF)1.03
Genes detectedALKBH4
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
ALKBH4 impedes 5-FU Sensitivity through suppressing GSDME induced pyroptosis in gastric cancer.
PMID: 38902235
Cell Death Dis · 2024
1.00
2
ALKBH4 promotes tumourigenesis with a poor prognosis in non-small-cell lung cancer.
PMID: 33883577
Sci Rep · 2021
0.90
3
ALKBH4 Stabilization Is Required for Arsenic-Induced 6mA DNA Methylation Inhibition, Keratinocyte Malignant Transformation, and Tumorigenicity.
PMID: 37207134
Water (Basel) · 2022
0.80
4
ALKBH4 functions as a hypoxia-responsive tumor suppressor and inhibits metastasis and tumorigenesis.
PMID: 39400679
Cell Oncol (Dordr) · 2025
0.70
5
Spectroscopic and magnetic studies of wild-type and mutant forms of the Fe(II)- and 2-oxoglutarate-dependent decarboxylase ALKBH4.
PMID: 21166655
Biochem J · 2011
0.60