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8 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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ALKBH6
alkB homolog 6, nucleotide demethylase
Chromosome 19 · 19q13.12
NCBI Gene: 84964Ensembl: ENSG00000239382.12HGNC: HGNC:28243UniProt: B2RAE0
10PubMed Papers
18Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein binding2-oxoglutarate-dependent dioxygenase activitynucleuscytoplasmhistidinemianeoplasmAlzheimer diseasecancer
✦AI Summary

ALKBH6 is a Fe(2+)/2-oxoglutarate-dependent dioxygenase that functions as a nucleotide demethylase with specialized substrate preferences 1. It catalyzes oxidative demethylation of nucleic acids, specifically demethylating N-7-methyl-GMP and N-1-methyl-adenosine monophosphate in a phosphate-dependent manner 2. ALKBH6 preferentially binds single-stranded DNA and RNA over double-stranded nucleic acids through unique Flip domains that discriminate against dsDNA and flip methylated lesions 3. The enzyme localizes to both cytoplasm and nucleus and participates in nucleic acid damage repair pathways 3. Clinically, ALKBH6 maintains genomic stability in pancreatic cancer; loss of ALKBH6 increases alkylating agent-induced DNA damage and decreases cell survival, while overexpression correlates with improved patient outcomes 4. ALKBH6 is frequently gained in embryonal rhabdomyosarcoma, suggesting a role in this pediatric malignancy 5. Structurally, ALKBH6 interacts with the tumor suppressor transcription repressor ZMYND11, revealing cross-talk between histone modification and nucleic acid modification in epigenetic regulation 36. This ALKBH6-ZMYND11 interaction represents a previously uncharacterized epigenetic mechanism in tumor suppression.

Sources cited
1
ALKBH6 is a Fe(2+)/2-oxoglutarate-dependent dioxygenase
PMID: 39845104
2
ALKBH6 demethylates N-7-methyl-GMP and N-1-methyl-adenosine monophosphate in a phosphate-dependent manner
PMID: 40885392
3
ALKBH6 preferentially binds ssDNA/ssRNA over dsDNA through unique Flip domains and participates in nucleic acid damage repair
PMID: 35120926
4
Loss of ALKBH6 increases alkylating agent-induced DNA damage and decreases cell survival in pancreatic cancer; overexpression improves patient survival
PMID: 33897761
5
ALKBH6 is frequently gained in embryonal rhabdomyosarcoma
PMID: 24551291
6
ALKBH6 interacts with tumor suppressor ZMYND11 in an epigenetic mechanism
PMID: 41591843
Disease Associationsⓘ18
histidinemiaOpen Targets
0.03Suggestive
neoplasmOpen Targets
0.02Suggestive
Alzheimer diseaseOpen Targets
0.01Suggestive
cancerOpen Targets
0.01Suggestive
lung adenocarcinomaOpen Targets
0.01Suggestive
Pick diseaseOpen Targets
0.01Suggestive
gastric cancerOpen Targets
0.00Suggestive
low grade gliomaOpen Targets
0.00Suggestive
lymph node metastatic carcinomaOpen Targets
0.00Suggestive
embryonal rhabdomyosarcomaOpen Targets
0.00Suggestive
adenocarcinomaOpen Targets
0.00Suggestive
head and neck squamous cell carcinomaOpen Targets
0.00Suggestive
melanomaOpen Targets
0.00Suggestive
renal cell carcinomaOpen Targets
0.00Suggestive
non-small cell lung carcinomaOpen Targets
0.00Suggestive
glioma susceptibility 1Open Targets
0.00Suggestive
lung cancerOpen Targets
0.00Suggestive
ovarian serous cystadenocarcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ALKBH2Protein interaction99%ALKBH1Protein interaction95%ALKBH4Protein interaction95%JMJD4Protein interaction95%ALKBH7Protein interaction95%MED29Protein interaction89%
Tissue Expression6 tissues
Liver
100%
Ovary
99%
Lung
68%
Bone Marrow
67%
Brain
39%
Heart
18%
Gene Interaction Network
Click a node to explore
ALKBH6ALKBH2ALKBH1ALKBH4JMJD4ALKBH7MED29
PROTEIN STRUCTURE
Preparing viewer…
PDB7VJV · 1.75 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.15LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.81 [0.57–1.15]
RankingsWhere ALKBH6 stands among ~20K protein-coding genes
  • #16,980of 20,598
    Most Researched10
  • #12,017of 17,882
    Most Constrained (LOEUF)1.15
Genes detectedALKBH6
Sources retrieved8 papers
Response time—
📄 Sources
8▼
1
Human ALKBH6 Is Required for Maintenance of Genomic Stability and Promoting Cell Survival During Exposure of Alkylating Agents in Pancreatic Cancer.
PMID: 33897761
Front Genet · 2021
1.00
2
Structural insights into the interactions and epigenetic functions of human nucleic acid repair protein ALKBH6.
PMID: 35120926
J Biol Chem · 2022
0.88
3
Chromosomal and genetic imbalances in Chinese patients with rhabdomyosarcoma detected by high-resolution array comparative genomic hybridization.
PMID: 24551291
Int J Clin Exp Pathol · 2014
0.75
4
Identification of ALKBH6 as a nucleotide demethylase with a distinct substrate preference.
PMID: 40885392
J Biol Chem · 2025
0.63
5
Functional and comparative analysis of the Fe
PMID: 39845104
Biol Methods Protoc · 2025
0.50