HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
9 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
ARHGEF39
Rho guanine nucleotide exchange factor 39
Chromosome 9 · 9p13.3
NCBI Gene: 84904Ensembl: ENSG00000137135.19HGNC: HGNC:25909UniProt: Q8N4T4
21PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingpositive regulation of cell migrationplasma membraneguanyl-nucleotide exchange factor activityneurodegenerative diseasetype 2 diabetes mellitushepatocellular carcinomanonpapillary renal cell carcinoma
✦AI Summary

ARHGEF39 is a Dbl-family guanine nucleotide exchange factor that functions primarily as a Rac1-GEF, promoting cell proliferation and migration through activation of small GTPase signaling cascades. As a Rac-GEF, ARHGEF39 facilitates GDP-to-GTP exchange on Rac1, driving actin cytoskeleton reorganization essential for cell motility 1. The protein operates through multiple signaling pathways depending on cellular context: in lung adenocarcinoma, ARHGEF39 mediates Rac1-dependent migration upon EGFR and c-Met activation 1; in gastric cancer, it promotes proliferation and migration via Akt/PI3K signaling 2; and in non-small cell lung cancer, it activates the Rac1/P38 MAPK/ATF2 axis, increasing expression of cell-cycle and invasion-associated proteins (Cyclin A2, Cyclin D1, MMP2) 3. In hepatocellular carcinoma, ARHGEF39 is transcriptionally regulated by E2F1 and promotes metastasis through enhanced fatty acid metabolism 4. Clinically, ARHGEF39 overexpression is significantly associated with poor prognosis across multiple cancer types including HCC, NSCLC, and gastric cancer, correlating with increased tumor size and reduced overall survival 53. Additionally, ARHGEF39 variants have been identified as African ancestry-specific risk loci for eosinophilic esophagitis 6 and putative neurological disorder susceptibility factors 7.

Sources cited
1
ARHGEF39 is a Rac1-GEF essential for Rac1-mediated lung cancer cell migration upon EGFR and c-Met activation
PMID: 34731623
2
ARHGEF39 overexpression promotes gastric cancer cell proliferation and migration via Akt signaling and PI3K pathway
PMID: 28871449
3
ARHGEF39 promotes NSCLC tumor progression through Rac1/P38 MAPK/ATF2 signaling and predicts poor patient prognosis
PMID: 29382922
4
ARHGEF39 is transcriptionally regulated by E2F1 and promotes HCC metastasis through fatty acid metabolism pathways
PMID: 39128592
5
High ARHGEF39 expression is significantly associated with poor overall survival and disease-free survival in HCC patients
PMID: 31626606
6
ARHGEF39 variants at 9p13.3 are African ancestry-specific risk loci for eosinophilic esophagitis
PMID: 36400179
7
ARHGEF39 is identified as a putative risk factor for specific language impairment through regulatory variant analysis
PMID: 28289279
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.37Weak
type 2 diabetes mellitusOpen Targets
0.14Weak
hepatocellular carcinomaOpen Targets
0.09Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.07Suggestive
Alzheimer diseaseOpen Targets
0.06Suggestive
Abnormality of the skeletal systemOpen Targets
0.04Suggestive
osteochondrodysplasiaOpen Targets
0.04Suggestive
osteoarthritisOpen Targets
0.04Suggestive
cancerOpen Targets
0.02Suggestive
non-small cell lung carcinomaOpen Targets
0.02Suggestive
strictureOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.02Suggestive
gastric cancerOpen Targets
0.02Suggestive
liver cancerOpen Targets
0.02Suggestive
lung adenocarcinomaOpen Targets
0.01Suggestive
clear cell renal carcinomaOpen Targets
0.01Suggestive
specific language impairmentOpen Targets
0.01Suggestive
eosinophilic esophagitisOpen Targets
0.01Suggestive
lung cancerOpen Targets
0.00Suggestive
Epstein-Barr virus infectionOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PTP4A1Shared pathway100%ROR2Shared pathway50%FAM110CShared pathway50%TCAF2Shared pathway50%PLET1Shared pathway33%ELP6Shared pathway33%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
73%
Brain
55%
Liver
40%
Ovary
36%
Heart
21%
Gene Interaction Network
Click a node to explore
ARHGEF39PTP4A1ROR2FAM110CTCAF2PLET1ELP6
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q8N4T4
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.26LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.99 [0.78–1.26]
RankingsWhere ARHGEF39 stands among ~20K protein-coding genes
  • #13,826of 20,598
    Most Researched21
  • #13,331of 17,882
    Most Constrained (LOEUF)1.26
Genes detectedARHGEF39
Sources retrieved9 papers
Response time—
📄 Sources
9▼
1
FARP1, ARHGEF39, and TIAM2 are essential receptor tyrosine kinase effectors for Rac1-dependent cell motility in human lung adenocarcinoma.
PMID: 34731623
Cell Rep · 2021
1.00
2
NRG1 fusions in breast cancer.
PMID: 33413557
Breast Cancer Res · 2021
0.89
3
ARHGEF39 promotes gastric cancer cell proliferation and migration via Akt signaling pathway.
PMID: 28871449
Mol Cell Biochem · 2018
0.78
4
ARHGEF39 targeted by E2F1 fosters hepatocellular carcinoma metastasis by mediating fatty acid metabolism.
PMID: 39128592
Clin Res Hepatol Gastroenterol · 2024
0.67
5
ARHGEF39 promotes tumor progression via activation of Rac1/P38 MAPK/ATF2 signaling and predicts poor prognosis in non-small cell lung cancer patients.
PMID: 29382922
Lab Invest · 2018
0.56