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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ATG2B
autophagy related 2B
Chromosome 14 · 14q32.2
NCBI Gene: 55102Ensembl: ENSG00000066739.13HGNC: HGNC:20187UniProt: Q96BY7
85PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
lipid transfer activityprotein bindingendoplasmic reticulumautophagosome assemblySjogren syndromeheart diseasealcohol drinkingneurodegenerative disease
✦AI Summary

ATG2B is a lipid transfer protein essential for autophagosome biogenesis and lipid droplet regulation. Mechanistically, ATG2B tethers the isolation membrane (IM) edge to the endoplasmic reticulum (ER) and directly transfers phospholipids from ER to IM for membrane expansion 1. This lipid transfer activity is enhanced by WDR45/WIPI4, which promotes ATG2B association with phosphatidylinositol-3-phosphate (PI3P)-containing membranes 1. ATG2B also functions in autophagosome-lysosome fusion through tethering interactions with SNARE proteins 2. Beyond autophagy initiation, ATG2B is subject to post-translational regulation: SIRT1-mediated deacetylation enhances ATG2B stability and activity 3, while the E3 ubiquitin ligase RNF5 targets it for degradation 4. Clinically, ATG2B dysregulation associates with cancer progression. Germline duplications of ATG2B predispose to myeloproliferative neoplasms by enhancing hematopoietic progenitor differentiation and TPO sensitivity 5. Conversely, ATG2B upregulation via circRNA-mediated RNF5 inhibition promotes gastric cancer malignancy 4, while therapeutic ACSS2 inhibition activates autophagy through SIRT1-mediated ATG2B deacetylation, reducing ovarian cancer chemoresistance 3. ATG2B deletion alone does not impair autophagy but requires GSKIP cooperation for hematopoietic stem cell maintenance 6.

Sources cited
1
ATG2B tethers IM to ER and mediates direct lipid transfer for IM expansion; activity enhanced by WDR45/WIPI4 and negatively charged lipids
PMID: 31721365
2
ATG2A (and by extension ATG2 family) functions in autophagosome-lysosome fusion through tethering interactions with SNARE proteins STX17, SNAP29, VAMP8
PMID: 40083067
3
SIRT1 mediates deacetylation of ATG2B, enhancing autophagy activation and reducing cancer malignancy and chemoresistance
PMID: 39362518
4
circDHX8 prevents RNF5-mediated ubiquitin degradation of ATG2B, promoting gastric cancer progression through enhanced autophagy
PMID: 38866787
5
Germline duplication of ATG2B predisposes to myeloproliferative neoplasms by enhancing hematopoietic progenitor differentiation and TPO sensitivity
PMID: 26280900
6
ATG2B and GSKIP knockout together (but not separately) decreases hematopoietic stem cells through increased oxidative phosphorylation, not autophagy defects
PMID: 34748402
Disease Associationsⓘ20
Sjogren syndromeOpen Targets
0.34Weak
heart diseaseOpen Targets
0.28Weak
alcohol drinkingOpen Targets
0.28Weak
neurodegenerative diseaseOpen Targets
0.21Weak
colorectal carcinomaOpen Targets
0.08Suggestive
gastrointestinal stromal tumorOpen Targets
0.06Suggestive
triple-negative breast cancerOpen Targets
0.04Suggestive
neoplasmOpen Targets
0.04Suggestive
breast cancerOpen Targets
0.03Suggestive
polycythemiaOpen Targets
0.03Suggestive
Ataxia with vitamin E deficiencyOpen Targets
0.03Suggestive
familial isolated deficiency of vitamin EOpen Targets
0.03Suggestive
X-linked retinoschisisOpen Targets
0.03Suggestive
non-alcoholic steatohepatitisOpen Targets
0.03Suggestive
Respiratory insufficiencyOpen Targets
0.02Suggestive
nasopharyngeal carcinomaOpen Targets
0.02Suggestive
ovarian carcinomaOpen Targets
0.02Suggestive
osteosarcomaOpen Targets
0.02Suggestive
SepsisOpen Targets
0.02Suggestive
glioblastomaOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ATG5Protein interaction97%GABARAPProtein interaction97%GABARAPL1Protein interaction97%ATG10Protein interaction95%ATG7Protein interaction92%VPS13DProtein interaction81%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
94%
Ovary
78%
Brain
71%
Lung
63%
Heart
62%
Gene Interaction Network
Click a node to explore
ATG2BATG5GABARAPGABARAPL1ATG10ATG7VPS13D
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q96BY7
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.59Moderately Constrained
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.49 [0.41–0.59]
RankingsWhere ATG2B stands among ~20K protein-coding genes
  • #5,592of 20,598
    Most Researched85
  • #3,946of 17,882
    Most Constrained (LOEUF)0.59 · top quartile
Genes detectedATG2B
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Human gastric cancer progression and stabilization of ATG2B through RNF5 binding facilitated by autophagy-associated CircDHX8.
PMID: 38866787
Cell Death Dis · 2024
1.00
2
VPS13A and VPS13C are lipid transport proteins differentially localized at ER contact sites.
PMID: 30093493
J Cell Biol · 2018
0.90
3
Inhibition of ACSS2 triggers glycolysis inhibition and nuclear translocation to activate SIRT1/ATG5/ATG2B deacetylation axis, promoting autophagy and reducing malignancy and chemoresistance in ovarian cancer.
PMID: 39362518
Metabolism · 2025
0.80
4
ATG2A acts as a tether to regulate autophagosome-lysosome fusion in neural cells.
PMID: 40083067
Autophagy · 2025
0.70
5
Human ATG2B possesses a lipid transfer activity which is accelerated by negatively charged lipids and WIPI4.
PMID: 31721365
Genes Cells · 2020
0.60