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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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BCKDK
branched chain keto acid dehydrogenase kinase
Chromosome 16 Β· 16p11.2
NCBI Gene: 10295Ensembl: ENSG00000103507.15HGNC: HGNC:16902UniProt: O14874
79PubMed Papers
21Diseases
0Drugs
17Pathogenic Variants
FUNCTIONAL ROLE
Kinase
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
mitochondrionprotein bindingprotein serine/threonine phosphatase activitylipid biosynthetic processbranched-chain keto acid dehydrogenase kinase deficiencyIntellectual disabilitymaple syrup urine disease type 1Aneuroinflammatory disorder
✦AI Summary

BCKDK (branched chain keto acid dehydrogenase kinase) is a serine/threonine kinase that serves as a critical metabolic regulatory hub controlling branched-chain amino acid (BCAA) catabolism and broader metabolic homeostasis. The primary function of BCKDK is to phosphorylate and inactivate the branched-chain Ξ±-ketoacid dehydrogenase (BCKDH) complex, the rate-limiting enzyme in BCAA catabolism, by phosphorylating the BCKDHA subunit at Ser-337 1. This phosphorylation disrupts substrate channeling between E1 and E2 components, effectively shutting down BCAA breakdown 1. Additionally, BCKDK phosphorylates cytosolic ACLY at Ser-455, coordinating BCAA metabolism with lipogenesis during feeding states 2. Disease relevance is extensive, as BCKDK overexpression contributes to obesity-associated insulin resistance through BCAA accumulation 3, promotes cancer metastasis in breast and lung cancers 45, and drives heart failure with preserved ejection fraction (HFpEF) through impaired cardiac lymphatic function 6. Clinically, BCKDK inhibition shows therapeutic promise, with selective inhibitors like BT2 and PF-07328948 demonstrating efficacy in treating diabetes, heart failure, and kidney dysfunction in preclinical models 3789, making BCKDK an attractive therapeutic target for cardiovascular-kidney-metabolic syndrome.

Sources cited
1
BCKDK phosphorylates BCKDHA at Ser-337 and disrupts substrate channeling in the BCKDH complex
PMID: 37558654
2
BCKDK phosphorylates ACLY at Ser-455 and coordinates BCAA metabolism with lipogenesis
PMID: 29779826
3
BCKDK overexpression contributes to obesity-associated insulin resistance through BCAA accumulation
PMID: 31167878
4
BCKDK promotes breast cancer metastasis by inhibiting TRIM21 ubiquitination of talin1
PMID: 37460470
5
BCKDK promotes lung cancer progression and drug resistance through the BCLAF1/MYC/HK2 axis
PMID: 40442441
6
BCKDK overexpression drives HFpEF through impaired cardiac lymphatic function
PMID: 40166847
7
BCKDK inhibition with BT2 improves heart failure outcomes in preclinical models
PMID: 40521197
8
PF-07328948 is a selective BCKDK inhibitor showing clinical promise with good tolerability
PMID: 39560668
9
BCKDK inhibition improves kidney function in cardiovascular-kidney-metabolic syndrome models
PMID: 40409667
Disease Associationsβ“˜21
branched-chain keto acid dehydrogenase kinase deficiencyOpen Targets
0.76Strong
Intellectual disabilityOpen Targets
0.44Moderate
maple syrup urine disease type 1AOpen Targets
0.27Weak
neuroinflammatory disorderOpen Targets
0.22Weak
genetic disorderOpen Targets
0.19Weak
maple syrup urine disease, mild variantOpen Targets
0.12Weak
neoplasmOpen Targets
0.10Weak
triple-negative breast cancerOpen Targets
0.10Suggestive
breast cancerOpen Targets
0.10Suggestive
non-small cell lung carcinomaOpen Targets
0.09Suggestive
colorectal carcinomaOpen Targets
0.09Suggestive
Parkinson diseaseOpen Targets
0.08Suggestive
cancerOpen Targets
0.08Suggestive
glioblastoma multiformeOpen Targets
0.08Suggestive
metabolic syndromeOpen Targets
0.08Suggestive
gliomaOpen Targets
0.08Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.07Suggestive
myocarditisOpen Targets
0.05Suggestive
SepsisOpen Targets
0.04Suggestive
hepatocellular carcinomaOpen Targets
0.04Suggestive
Branched-chain ketoacid dehydrogenase kinase deficiencyUniProt
Pathogenic Variants17
NM_005881.4(BCKDK):c.1159C>T (p.Gln387Ter)Pathogenic
Branched-chain keto acid dehydrogenase kinase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 387
NC_000016.10:g.31108386_31112801delPathogenic
Branched-chain keto acid dehydrogenase kinase deficiency
β˜…β˜†β˜†β˜†2025
NM_005881.4(BCKDK):c.936G>C (p.Arg312Ser)Likely pathogenic
Branched-chain keto acid dehydrogenase kinase deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 312
NM_005881.4(BCKDK):c.355_356insC (p.Asn119fs)Pathogenic
Branched-chain keto acid dehydrogenase kinase deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 119
NM_005881.4(BCKDK):c.453C>A (p.Tyr151Ter)Pathogenic
Branched-chain keto acid dehydrogenase kinase deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 151
NM_005881.4(BCKDK):c.979C>T (p.Arg327Trp)Likely pathogenic
Branched-chain keto acid dehydrogenase kinase deficiency
β˜…β˜†β˜†β˜†2023β†’ Residue 327
NM_005881.4(BCKDK):c.433C>T (p.Gln145Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 145
NM_005881.4(BCKDK):c.466C>T (p.Arg156Ter)Pathogenic
Branched-chain keto acid dehydrogenase kinase deficiency|not provided
β˜…β˜†β˜†β˜†2021β†’ Residue 156
NM_005881.4(BCKDK):c.50_71del (p.Leu17fs)Pathogenic
Branched-chain keto acid dehydrogenase kinase deficiency
β˜…β˜†β˜†β˜†2021β†’ Residue 17
NM_005881.4(BCKDK):c.879C>A (p.Tyr293Ter)Likely pathogenic
See cases
β˜…β˜†β˜†β˜†2019β†’ Residue 293
NM_005881.4(BCKDK):c.453C>G (p.Tyr151Ter)Likely pathogenic
Branched-chain keto acid dehydrogenase kinase deficiency
β˜…β˜†β˜†β˜†2016β†’ Residue 151
NM_005881.4(BCKDK):c.543+1G>ALikely pathogenic
Maple syrup urine disease type 1A
β˜…β˜†β˜†β˜†
NM_005881.4(BCKDK):c.1165_1220del (p.Leu389fs)Likely pathogenic
Branched-chain keto acid dehydrogenase kinase deficiency
β˜†β˜†β˜†β˜†2025β†’ Residue 389
NM_005881.4(BCKDK):c.264+1G>CPathogenic
Branched-chain keto acid dehydrogenase kinase deficiency
β˜†β˜†β˜†β˜†2024
NM_005881.4(BCKDK):c.671G>C (p.Arg224Pro)Pathogenic
Branched-chain keto acid dehydrogenase kinase deficiency
β˜†β˜†β˜†β˜†2012β†’ Residue 224
NM_005881.4(BCKDK):c.222del (p.Met74fs)Pathogenic
Branched-chain keto acid dehydrogenase kinase deficiency
β˜†β˜†β˜†β˜†2012β†’ Residue 74
NM_005881.4(BCKDK):c.646_649del (p.Asp216fs)Likely pathogenic
Intellectual disability
β˜†β˜†β˜†β˜†β†’ Residue 216
View on ClinVar β†—
Related Genes
DLSTProtein interaction100%PPM1KProtein interaction97%BCKDHAProtein interaction77%BCKDHBProtein interaction77%DBTProtein interaction77%PSMC2Protein interaction70%
Tissue Expression6 tissues
Liver
100%
Heart
72%
Lung
57%
Ovary
53%
Brain
31%
Bone Marrow
16%
Gene Interaction Network
Click a node to explore
BCKDKDLSTPPM1KBCKDHABCKDHBDBTPSMC2
PROTEIN STRUCTURE
Preparing viewer…
PDB9DI9 Β· 2.15 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.85LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.62 [0.46–0.85]
RankingsWhere BCKDK stands among ~20K protein-coding genes
  • #5,979of 20,598
    Most Researched79
  • #2,341of 5,498
    Most Pathogenic Variants17
  • #7,452of 17,882
    Most Constrained (LOEUF)0.85
Genes detectedBCKDK
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Lymphatic Endothelial Branched-Chain Amino Acid Catabolic Defects Undermine Cardiac Lymphatic Integrity and Drive HFpEF.
PMID: 40166847
Circulation Β· 2025
1.00
2
BCKDK regulates breast cancer cell adhesion and tumor metastasis by inhibiting TRIM21 ubiquitinate talin1.
PMID: 37460470
Cell Death Dis Β· 2023
0.90
3
Targeting the BCKDK/BCLAF1/MYC/HK2 axis to alter aerobic glycolysis and overcome Trametinib resistance in lung cancer.
PMID: 40442441
Cell Death Differ Β· 2025
0.80
4
BCKDH kinase promotes hepatic gluconeogenesis independent of BCKDHA.
PMID: 39389936
Cell Death Dis Β· 2024
0.70
5
Targeting BCAA Catabolism to Treat Obesity-Associated Insulin Resistance.
PMID: 31167878
Diabetes Β· 2019
0.60