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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PPM1K
protein phosphatase, Mg2+/Mn2+ dependent 1K
Chromosome 4 Β· 4q22.1
NCBI Gene: 152926Ensembl: ENSG00000163644.16HGNC: HGNC:25415UniProt: Q8N3J5
47PubMed Papers
21Diseases
0Drugs
2Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein serine/threonine phosphatase activityprotein bindingmanganese ion bindingbranched-chain amino acid catabolic processmaple syrup urine disease, mild variantmaple syrup urine diseaseintermediate maple syrup urine diseasepreeclampsia
✦AI Summary

PPM1K is a manganese/magnesium-dependent serine/threonine phosphatase that serves as a central metabolic regulator coordinating branched-chain amino acid (BCAA) catabolism with glucose and lipid metabolism 1. PPM1K forms a functional regulatory pair with BCKDK kinase, controlling the activity of the branched-chain Ξ±-ketoacid dehydrogenase (BCKDH) complex by dephosphorylating BCKDHA at Ser-337, thereby activating BCAA catabolism when BCAA levels are elevated 2. Beyond BCAA metabolism, PPM1K regulates lipogenesis by dephosphorylating and inactivating ATP-citrate lyase (ACL) during fasting states 2. Disease relevance includes associations with sarcopenia, where PPM1K deficiency impairs muscle mass and strength through disrupted BCAA catabolism and dysregulated mTOR signaling 3. PPM1K dysfunction also contributes to polycystic ovary syndrome (PCOS), with deficient mice exhibiting hyperandrogenemia and abnormal follicle development that can be ameliorated by dietary BCAA restriction 4. In hepatocellular carcinoma, PPM1K stabilization under glutamine deprivation enhances BCAA catabolism to support nucleotide synthesis and tumor progression 5. PPM1K represents a potential therapeutic target for metabolic diseases, with overexpression improving glucose tolerance and reducing hepatic steatosis in obesity models 2.

Sources cited
1
PPM1K is a manganese/magnesium-dependent serine/threonine phosphatase in the PPM family
PMID: 32650009
2
PPM1K forms a regulatory pair with BCKDK, dephosphorylates BCKDHA and ACL, and overexpression improves metabolic phenotypes
PMID: 29779826
3
PPM1K deficiency in mice causes sarcopenia through disrupted BCAA catabolism and dysregulated mTOR signaling
PMID: 39910243
4
PPM1K deficiency causes PCOS-like traits in mice including hyperandrogenemia and abnormal follicle development
PMID: 36863088
5
PPM1K stabilization in hepatocellular carcinoma enhances BCAA catabolism to support tumor progression
PMID: 36417878
Disease Associationsβ“˜21
maple syrup urine disease, mild variantOpen Targets
0.46Moderate
maple syrup urine diseaseOpen Targets
0.38Weak
intermediate maple syrup urine diseaseOpen Targets
0.37Weak
preeclampsiaOpen Targets
0.29Weak
breast carcinomaOpen Targets
0.27Weak
aneurysmOpen Targets
0.26Weak
poisoningOpen Targets
0.26Weak
response to antibioticOpen Targets
0.26Weak
response to xenobiotic stimulusOpen Targets
0.26Weak
coronary artery calcificationOpen Targets
0.22Weak
Abnormality of the gastrointestinal tractOpen Targets
0.21Weak
goutOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.06Suggestive
tooth diseaseOpen Targets
0.06Suggestive
pancreatic adenocarcinomaOpen Targets
0.05Suggestive
renal fibrosisOpen Targets
0.05Suggestive
polycystic ovary syndromeOpen Targets
0.04Suggestive
dilated cardiomyopathyOpen Targets
0.04Suggestive
hepatocellular carcinomaOpen Targets
0.04Suggestive
Fabry diseaseOpen Targets
0.04Suggestive
Maple syrup urine disease, mild variantUniProt
Pathogenic Variants2
NM_152542.5(PPM1K):c.586C>T (p.Arg196Ter)Pathogenic
Maple syrup urine disease, mild variant
β˜…β˜†β˜†β˜†2025β†’ Residue 196
NM_152542.5(PPM1K):c.1A>G (p.Met1Val)Pathogenic
Maple syrup urine disease, mild variant
β˜†β˜†β˜†β˜†2024β†’ Residue 1
View on ClinVar β†—
Related Genes
BCKDKProtein interaction97%DBTProtein interaction79%AANATProtein interaction75%BCKDHBProtein interaction73%BCKDHAProtein interaction67%SLC25A44Shared pathway50%
Tissue Expression6 tissues
Heart
100%
Brain
29%
Ovary
20%
Bone Marrow
9%
Lung
6%
Liver
5%
Gene Interaction Network
Click a node to explore
PPM1KBCKDKDBTAANATBCKDHBBCKDHASLC25A44
PROTEIN STRUCTURE
Preparing viewer…
PDB2IQ1 Β· 2.25 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.82LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.55 [0.37–0.82]
RankingsWhere PPM1K stands among ~20K protein-coding genes
  • #9,258of 20,598
    Most Researched47
  • #4,449of 5,498
    Most Pathogenic Variants2
  • #6,943of 17,882
    Most Constrained (LOEUF)0.82
Genes detectedPPM1K
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Multi-omic profiling of sarcopenia identifies disrupted branched-chain amino acid catabolism as a causal mechanism and therapeutic target.
PMID: 39910243
Nat Aging Β· 2025
1.00
2
Branched-chain amino acid catabolism breaks glutamine addiction to sustain hepatocellular carcinoma progression.
PMID: 36417878
Cell Rep Β· 2022
0.90
3
PPM1K-regulated impaired catabolism of branched-chain amino acids orchestrates polycystic ovary syndrome.
PMID: 36863088
EBioMedicine Β· 2023
0.80
4
Insulin action, type 2 diabetes, and branched-chain amino acids: A two-way street.
PMID: 34044180
Mol Metab Β· 2021
0.70
5
Branched-chain amino acids in metabolic signalling and insulin resistance.
PMID: 25287287
Nat Rev Endocrinol Β· 2014
0.60