HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
BEX3
brain expressed X-linked 3
Chromosome X · Xq22.2
NCBI Gene: 27018Ensembl: ENSG00000166681.15HGNC: HGNC:13388UniProt: Q00994
34PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingidentical protein bindingcytosolnegative regulation of protein ubiquitinationglioblastoma multiformelung adenocarcinomaneuroblastomanasopharyngeal carcinoma
✦AI Summary

BEX3 is an X-linked protein with pleiotropic roles in neuronal survival, reductive stress regulation, and cancer suppression. Structurally, BEX3 forms high-order oligomers with partially folded regions and a proteolysis-resistant core 1. In neuronal development, BEX3 enhances NGF-mediated survival by directly binding the trkA promoter to increase TrkA receptor expression; BEX3 downregulation increases apoptosis in NGF-deprived sensory neurons 2. BEX3 functions as a pseudosubstrate inhibitor of the CUL2FEM1B ubiquitin ligase, using zinc as a molecular glue to prevent premature degradation of FNIP1 during reductive stress, thereby protecting cells from pathological ROS depletion 3. Unlike its family member BEX2 (an oncogene), BEX3 acts as a tumor suppressor—overexpression inhibits breast cancer tumor formation in xenograft models 4. BEX3 emerged through transposon domestication and is enriched in the CNS with neural-specific functions; alterations in BEX3 expression correlate with developmental competence in human embryos and are associated with neurological disorders including autism and schizophrenia 5. Recent evidence links BEX3 overexpression to hypoxia and poor survival in proficient mismatch repair gastric cancers 6, suggesting context-dependent roles in disease pathogenesis.

Sources cited
1
BEX3 functions as a pseudosubstrate inhibitor of CUL2FEM1B, using zinc to regulate reductive stress responses and FNIP1 degradation
PMID: 34562363
2
BEX3 regulates TrkA expression through promoter binding and enhances NGF-dependent neuronal survival and differentiation
PMID: 25948268
3
BEX3 acts as a tumor suppressor in breast cancer, with overexpression inhibiting tumor formation, contrasting with BEX2's oncogenic role
PMID: 26408910
4
BEX3 forms high-order oligomers with partially folded N- and C-termini and a proteolysis-resistant core around residues 55-120
PMID: 26383250
5
BEX3 originated through transposon domestication, is enriched in the CNS, and is relevant for advanced neurological functions and associated with autism and schizophrenia
PMID: 33100228
6
BEX3 is overexpressed in proficient mismatch repair gastric cancer cells and correlates with poorer survival
PMID: 39482333
7
BEX3 expression is suppressed in 8-cell embryos that fail to form blastocysts, indicating association with developmental competence
PMID: 36943184
8
BEX3 is cytoplasmic, can bind transition metals through a histidine-rich domain, and is degraded by the proteasome
PMID: 15958283
Disease Associationsⓘ20
glioblastoma multiformeOpen Targets
0.08Suggestive
lung adenocarcinomaOpen Targets
0.07Suggestive
neuroblastomaOpen Targets
0.07Suggestive
nasopharyngeal carcinomaOpen Targets
0.07Suggestive
Familial ocular anterior segment mesenchymal dysgenesisOpen Targets
0.05Suggestive
Parkinson diseaseOpen Targets
0.04Suggestive
cancerOpen Targets
0.03Suggestive
acute lymphoblastic leukemiaOpen Targets
0.03Suggestive
polycystic kidney disease 5Open Targets
0.03Suggestive
congenital primary aphakiaOpen Targets
0.03Suggestive
autosomal recessive primary microcephalyOpen Targets
0.03Suggestive
isolated congenital megalocorneaOpen Targets
0.03Suggestive
megalocorneaOpen Targets
0.03Suggestive
persistent hyperplastic primary vitreousOpen Targets
0.03Suggestive
Juvenile cataract - microcornea - renal glucosuriaOpen Targets
0.03Suggestive
juvenile cataract-microcornea-renal glucosuria syndromeOpen Targets
0.03Suggestive
GRN-related frontotemporal lobar degeneration with Tdp43 inclusionsOpen Targets
0.03Suggestive
microphthalmia, isolated, with colobomaOpen Targets
0.03Suggestive
Pick diseaseOpen Targets
0.03Suggestive
anterior segment dysgenesis 7Open Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NGFProtein interaction99%NGFRProtein interaction99%MAGED1Protein interaction99%TCEAL6Protein interaction97%YWHAEProtein interaction94%TCEAL1Protein interaction90%
Tissue Expression6 tissues
Ovary
100%
Brain
99%
Heart
52%
Bone Marrow
20%
Liver
17%
Lung
17%
Gene Interaction Network
Click a node to explore
BEX3NGFNGFRMAGED1TCEAL6YWHAETCEAL1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q00994
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.78LoF Tolerant
pLIⓘ
0.75Intermediate
Observed/Expected LoF0.16 [0.06–0.78]
RankingsWhere BEX3 stands among ~20K protein-coding genes
  • #11,118of 20,598
    Most Researched34
  • #6,379of 17,882
    Most Constrained (LOEUF)0.78
Genes detectedBEX3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Structural basis and regulation of the reductive stress response.
PMID: 34562363
Cell · 2021
1.00
2
Bex3 Dimerization Regulates NGF-Dependent Neuronal Survival and Differentiation by Enhancing trkA Gene Transcription.
PMID: 25948268
J Neurosci · 2015
0.90
3
Brain-Expressed X-linked (BEX) proteins in human cancers.
PMID: 26408910
Biochim Biophys Acta · 2015
0.80
4
SPP1+ macrophages and FAP+ fibroblasts promote the progression of pMMR gastric cancer.
PMID: 39482333
Sci Rep · 2024
0.70
5
Evaluate the developmental competence of human 8-cell embryos by single-cell RNA sequencing.
PMID: 36943184
Reprod Fertil · 2023
0.60