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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
BRF1
BRF1 general transcription factor IIIB subunit
Chromosome 14 Β· 14q32.33
NCBI Gene: 2972Ensembl: ENSG00000185024.19HGNC: HGNC:11551UniProt: Q92994
80PubMed Papers
21Diseases
0Drugs
12Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingtranscription factor TFIIIB complexnucleustranscription preinitiation complexCerebellar-facial-dental syndromegenetic disorderneurodegenerative diseaseIntellectual disability
✦AI Summary

BRF1 (TFIIB-related factor 1) is a general transcription factor essential for RNA polymerase III (Pol III) transcription initiation 1. The protein functions as a core component of the TFIIIB complex, with isoform 1 directing Pol III transcription of tRNA, 5S RNA, and adenovirus VA1, while isoform 2 specifically regulates U6 promoter transcription 1. BRF1 expression is transcriptionally regulated by multiple factors including estrogen receptor alpha (ERΞ±), Sp1, and Runx2, which control Pol III gene expression levels [PMID:28972307; 2; 36]. BRF1 is significantly overexpressed in estrogen receptor-positive breast cancer, where it correlates with enhanced translational capacity and cell proliferation [PMID:28972307; 47]. Environmental factors including alcohol and carcinogens upregulate BRF1 expression through ROS-mediated signaling pathways [PMID:31781337; 55]. BRF1 mutations cause cerebellofaciodental syndrome and are associated with neurodegenerative diseases, highlighting its developmental importance 1. Conditional Brf1 deletion in adult epithelial tissues induces apoptosis and disrupts organ homeostasis, demonstrating its essential role in tissue maintenance 6. However, BRF1 overexpression alone is insufficient to initiate tumorigenesis, suggesting a permissive rather than oncogenic role 6. BRF1 serves as a biomarker for breast cancer diagnosis and prognosis, and represents a potential therapeutic target.

Sources cited
1
BRF1 is overexpressed in breast cancer, interacts with ERΞ±, regulates Pol III genes, and serves as a biomarker for HBC diagnosis and prognosis
PMID: 28972307
2
Alcohol consumption increases BRF1 expression in breast cancer through deregulation of Pol III genes, linked to cell proliferation and tumor development
PMID: 31781337
3
BRF1 and RNA Pol III genes are novel biological targets of ROS signaling induced by dietary factors and carcinogens
PMID: 34646425
4
BRF1 mutations cause genetic diseases including cerebellofaciodental syndrome and are associated with neurodegenerative diseases; BRF1 is a component of TFIIIB transcription initiation factor
PMID: 34395528
5
Sp1 transcription factor modulates Pol III gene transcription by controlling BRF1 and GTF3C2 expression through promoter binding
PMID: 32115405
6
Runx2 mediates BRF1 expression and Pol III gene transcription; high Runx2 expression predicts worse prognosis in advanced breast cancer
PMID: 32198086
7
BRF1 is localized to chromosome 14q22-q24 and is a member of immediate early gene family encoding nuclear transcription factors
PMID: 8595910
8
Brf1 is essential for organ homeostasis in intestine, liver, and pancreas; conditional deletion induces apoptosis; overexpression alone cannot initiate tumorigenesis
PMID: 30858608
Disease Associationsβ“˜21
Cerebellar-facial-dental syndromeOpen Targets
0.76Strong
genetic disorderOpen Targets
0.50Moderate
neurodegenerative diseaseOpen Targets
0.49Moderate
Intellectual disabilityOpen Targets
0.41Moderate
Abnormal heart morphologyOpen Targets
0.34Weak
Abnormality of the inner earOpen Targets
0.34Weak
congenital heart diseaseOpen Targets
0.34Weak
Moderate intellectual disabilityOpen Targets
0.34Weak
Postnatal growth retardationOpen Targets
0.34Weak
Primary microcephalyOpen Targets
0.34Weak
Sensorineural hearing impairmentOpen Targets
0.34Weak
sensorineural hearing lossOpen Targets
0.34Weak
colorectal cancerOpen Targets
0.26Weak
femur fractureOpen Targets
0.20Weak
developmental and epileptic encephalopathy, 66Open Targets
0.16Weak
alcohol drinkingOpen Targets
0.10Weak
hepatocellular carcinomaOpen Targets
0.10Suggestive
neoplasmOpen Targets
0.08Suggestive
myopiaOpen Targets
0.08Suggestive
lung cancerOpen Targets
0.08Suggestive
Cerebellofaciodental syndromeUniProt
Pathogenic Variants12
NM_001519.4(BRF1):c.875C>A (p.Pro292His)Pathogenic
Cerebellar-facial-dental syndrome|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 292
NM_001519.4(BRF1):c.677C>T (p.Ser226Leu)Pathogenic
Cerebellar-facial-dental syndrome|Inborn genetic diseases
β˜…β˜…β˜†β˜†2022β†’ Residue 226
NM_001519.4(BRF1):c.291del (p.Asn98fs)Likely pathogenic
BRF1-related disorder
β˜…β˜†β˜†β˜†2023β†’ Residue 98
NM_001519.4(BRF1):c.419G>C (p.Cys140Ser)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 140
NM_001519.4(BRF1):c.1649del (p.Gly550fs)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2021β†’ Residue 550
NM_001519.4(BRF1):c.794_795insTTTA (p.Glu266fs)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2021β†’ Residue 266
NM_001519.4(BRF1):c.875C>G (p.Pro292Arg)Likely pathogenic
See cases
β˜…β˜†β˜†β˜†2021β†’ Residue 292
NM_001519.4(BRF1):c.876dup (p.Ser293fs)Pathogenic
See cases
β˜…β˜†β˜†β˜†2021β†’ Residue 293
NM_001519.4(BRF1):c.1456_1457del (p.Arg486fs)Likely pathogenic
BRF1-related disorder
β˜†β˜†β˜†β˜†2024β†’ Residue 486
NM_001519.4(BRF1):c.1954G>A (p.Gly652Arg)Likely pathogenic
Colorectal cancer
β˜†β˜†β˜†β˜†2021β†’ Residue 652
NM_001519.4(BRF1):c.793_794delinsCATTTA (p.Thr265fs)Likely pathogenic
Cerebellar-facial-dental syndrome
β˜†β˜†β˜†β˜†2021β†’ Residue 265
NM_001519.4(BRF1):c.667C>T (p.Arg223Trp)Pathogenic
Cerebellar-facial-dental syndrome
β˜†β˜†β˜†β˜†2015β†’ Residue 223
View on ClinVar β†—
Related Genes
TBPProtein interaction100%BDP1Protein interaction100%POLR3FProtein interaction97%POLR3AProtein interaction92%POLR3BProtein interaction91%POLR1CProtein interaction86%
Tissue Expression6 tissues
Ovary
100%
Liver
91%
Bone Marrow
76%
Lung
71%
Brain
66%
Heart
44%
Gene Interaction Network
Click a node to explore
BRF1TBPBDP1POLR3FPOLR3APOLR3BPOLR1C
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q92994
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.92LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.74 [0.60–0.92]
RankingsWhere BRF1 stands among ~20K protein-coding genes
  • #5,927of 20,598
    Most Researched80
  • #2,677of 5,498
    Most Pathogenic Variants12
  • #8,459of 17,882
    Most Constrained (LOEUF)0.92
Genes detectedBRF1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Role of Brf1 interaction with ERΞ±, and significance of its overexpression, in human breast cancer.
PMID: 28972307
Mol Oncol Β· 2017
1.00
2
Alcohol Intake and Abnormal Expression of Brf1 in Breast Cancer.
PMID: 31781337
Oxid Med Cell Longev Β· 2019
0.90
3
ROS Signaling-Mediated Novel Biological Targets: Brf1 and RNA Pol III Genes.
PMID: 34646425
Oxid Med Cell Longev Β· 2021
0.80
4
RNA Polymerase III Subunit Mutations in Genetic Diseases.
PMID: 34395528
Front Mol Biosci Β· 2021
0.70
5
The transcription factor Sp1 modulates RNA polymerase III gene transcription by controlling
PMID: 32115405
J Biol Chem Β· 2020
0.60