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GeneE
7 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CACFD1
calcium channel flower domain containing 1
Chromosome 9 · 9q34.2
NCBI Gene: 11094Ensembl: ENSG00000160325.16HGNC: HGNC:1365UniProt: Q9UGQ2
19PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingvesicle-mediated transportimmunological synapseplasma membrane
✦AI Summary

CACFD1 (calcium channel flower domain containing 1) functions as a flower isoform that produces tissue-specific fitness fingerprints to identify and eliminate unfit cells during cell selection processes 1. In humans, CACFD1 behaves as a Flower-Win protein that confers competitive growth advantages to cells; cells with higher CACFD1 levels are recognized as 'winner' cells and are protected from apoptosis, while surrounding cells with lower levels are marked for elimination 1. This ancient cell recognition mechanism, originally evolved in Drosophila, is active in human cancer cells, where increased CACFD1 expression enables malignant cells to proliferate despite interaction with Lose-expressing stromal cells 1. Inhibition of CACFD1 expression reduces tumor growth and metastasis while inducing chemotherapy sensitivity 1. CACFD1 also involves vesicle-mediated transport and protein binding functions [GO annotations]. Genetically, CACFD1 variants (rs4962153, rs3094379) are implicated in shared pathways influencing both COVID-19 severity and coronary heart disease risk 2, and expression is regulated by GPSM1 genetic variants in skeletal muscle contexts 3. These findings suggest CACFD1 represents a conserved cellular competition mechanism with significant implications for cancer biology and disease susceptibility.

Sources cited
1
CACFD1 functions as a Flower-Win protein promoting competitive growth; cells with higher CACFD1 levels evade apoptosis while lower-expressing cells are marked for elimination; mechanism hijacked in cancer cells
PMID: 31341286
2
CACFD1 SNPs (rs4962153, rs3094379) simultaneously influence COVID-19 severity and coronary heart disease risk through shared genetic mechanisms
PMID: 37964352
3
CACFD1 expression is regulated by GPSM1 genetic variant rs28539249 in human skeletal muscle, associated with metabolic traits and endoplasmic reticulum stress pathways
PMID: 31959871
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LDLRAD1Shared pathway100%SFT2D2Shared pathway100%TMED8Shared pathway100%CD163L1Shared pathway100%RASEFShared pathway100%SSC4DShared pathway100%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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CACFD1LDLRAD1SFT2D2TMED8CD163L1RASEFSSC4D
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9UGQ2
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.86LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.40 [1.02–1.86]
RankingsWhere CACFD1 stands among ~20K protein-coding genes
  • #14,375of 20,598
    Most Researched19
  • #16,903of 17,882
    Most Constrained (LOEUF)1.86
Genes detectedCACFD1
Sources retrieved7 papers
Response time—
📄 Sources
7▼
1
Flower isoforms promote competitive growth in cancer.
PMID: 31341286
Nature · 2019
1.00
2
Identification of genetic loci jointly influencing COVID-19 and coronary heart diseases.
PMID: 37964352
Hum Genomics · 2023
0.86
3
Genome-wide meta-analysis associates GPSM1 with type 2 diabetes, a plausible gene involved in skeletal muscle function.
PMID: 31959871
J Hum Genet · 2020
0.71
4
Reactive astrocytes in ALS display diminished intron retention.
PMID: 33684213
Nucleic Acids Res · 2021
0.57
5
Biomarkers for C9orf7-ALS in Symptomatic and Pre-symptomatic Patients: State-of-the-art in the New Era of Clinical Trials.
PMID: 34864683
J Neuromuscul Dis · 2022
0.43