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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CAPN9
calpain 9
Chromosome 1 · 1q42.2
NCBI Gene: 10753Ensembl: ENSG00000135773.13HGNC: HGNC:1486UniProt: B4DNR4
20PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Protease
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
calcium-dependent cysteine-type endopeptidase activityproteolysiscytoplasmcalcium ion bindinghypertensionatrial fibrillationacquired thrombocytopeniacardiovascular disease
✦AI Summary

CAPN9 (calpain 9) encodes a calcium-dependent cysteine protease with tissue-specific expression and diverse cellular functions. The protein functions as part of a unique heterodimeric complex called 'G-calpain' with calpain 8, which is predominantly expressed in gastric mucosa and essential for gastric mucosal defense against injury 1. Beyond its gastrointestinal role, CAPN9 demonstrates broader physiological significance in fibrosis regulation, where TGFβ-induced expression of CAPN9 is required for mesenchymal transition and myofibroblast differentiation 2. Mice lacking functional CAPN9 show protection from bleomycin-induced lung fibrosis, carbon tetrachloride-induced liver fibrosis, and angiotensin II-induced cardiac fibrosis, suggesting therapeutic potential for fibrotic diseases 2. In cancer biology, CAPN9 promotes tumor progression in high-grade serous ovarian cancer, where it is negatively regulated by miR-585-3p and supports cell proliferation and migration 3. Additionally, CAPN9 contributes to epithelial cell lumen formation through activation of apoptotic pathways involving PKC-delta 4. The protein is also part of islet-specific metabolic gene networks regulated by NF-κB signaling, indicating roles in glucose homeostasis 5. Interestingly, downregulation of CAPN9 expression correlates with arterial stiffness in healthy individuals, potentially representing a homeostatic response 6.

Sources cited
1
CAPN9 forms G-calpain complex with calpain 8, essential for gastric mucosal defense
PMID: 20686710
2
CAPN9 is required for TGFβ-induced mesenchymal transition and fibrosis development
PMID: 31316008
3
CAPN9 promotes proliferation and migration in high-grade serous ovarian cancer
PMID: 34238324
4
CAPN9 contributes to epithelial cell lumen formation via PKC-delta activation
PMID: 19909740
5
CAPN9 is part of islet-specific metabolic gene networks regulated by NF-κB
PMID: 37311878
6
CAPN9 downregulation correlates with arterial stiffness in healthy individuals
PMID: 32375599
Disease Associationsⓘ20
hypertensionOpen Targets
0.45Moderate
atrial fibrillationOpen Targets
0.41Moderate
acquired thrombocytopeniaOpen Targets
0.32Weak
cardiovascular diseaseOpen Targets
0.32Weak
neurodegenerative diseaseOpen Targets
0.31Weak
response to xenobiotic stimulusOpen Targets
0.25Weak
essential hypertensionOpen Targets
0.08Suggestive
gastric cancerOpen Targets
0.08Suggestive
Barrett's esophagusOpen Targets
0.08Suggestive
esophageal adenocarcinomaOpen Targets
0.04Suggestive
neoplasmOpen Targets
0.04Suggestive
breast cancerOpen Targets
0.02Suggestive
alcohol drinkingOpen Targets
0.02Suggestive
ocular hypotensionOpen Targets
0.02Suggestive
colorectal cancerOpen Targets
0.02Suggestive
gastric non-cardia carcinomaOpen Targets
0.02Suggestive
lymph node metastatic carcinomaOpen Targets
0.01Suggestive
cancerOpen Targets
0.01Suggestive
gastric cardia carcinomaOpen Targets
0.01Suggestive
Umbilical herniaOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PGCShared pathway100%GKN1Protein interaction95%CASTProtein interaction77%PGA4Shared pathway50%PGA3Shared pathway50%CAPN14Shared pathway50%
Tissue Expression6 tissues
Lung
100%
Brain
96%
Heart
33%
Ovary
10%
Liver
3%
Bone Marrow
2%
Gene Interaction Network
Click a node to explore
CAPN9PGCGKN1CASTPGA4PGA3CAPN14
PROTEIN STRUCTURE
Preparing viewer…
PDB1ZIV · 2.31 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.04LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.84 [0.69–1.04]
RankingsWhere CAPN9 stands among ~20K protein-coding genes
  • #14,116of 20,598
    Most Researched20
  • #10,300of 17,882
    Most Constrained (LOEUF)1.04
Genes detectedCAPN9
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
RNA-sequencing analysis of differential gene expression associated with arterial stiffness.
PMID: 32375599
Vascular · 2020
1.00
2
MiR-585-3p suppresses tumor proliferation and migration by directly targeting CAPN9 in high grade serous ovarian cancer.
PMID: 34238324
J Ovarian Res · 2021
0.90
3
Calpain 9 as a therapeutic target in TGFβ-induced mesenchymal transition and fibrosis.
PMID: 31316008
Sci Transl Med · 2019
0.80
4
Role of calpain-9 and PKC-delta in the apoptotic mechanism of lumen formation in CEACAM1 transfected breast epithelial cells.
PMID: 19909740
Exp Cell Res · 2010
0.70
5
wde, calpA, if, dap160, and poe genes knock down Drosophila models exhibit neurofunctional deficit.
PMID: 35447243
Gene · 2022
0.60