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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CD69
CD69 molecule
Chromosome 12 · 12p13.31
NCBI Gene: 969Ensembl: ENSG00000110848.8HGNC: HGNC:1694UniProt: Q07108
104PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneReceptor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
transmembrane signaling receptor activityprotein bindingidentical protein bindingmolecular sequestering activityhypothyroidismthyroid diseasemyxedematype 1 diabetes mellitus
✦AI Summary

CD69 is a type II C-lectin transmembrane receptor that serves as a classical early activation marker appearing within one hour of T cell receptor stimulation 1. Beyond its role as an activation marker, CD69 functions as a critical regulator of tissue residency and immune cell homeostasis. It is constitutively expressed on tissue-resident memory T cells (TRMs) in diverse mucosal and lymphoid tissues, where it defines a core transcriptional signature distinct from circulating memory T cells 2. CD69 mechanistically regulates lymphocyte migration by acting as an S1PR1 receptor agonist, facilitating receptor internalization and degradation, thereby preventing tissue egress in response to sphingosine-1-phosphate 3. The molecule plays opposing roles in different immune contexts: it negatively regulates Th17 differentiation through galectin-1 interactions and promotes regulatory T cell conversion 4. In cancer immunotherapy, CD69 expression patterns distinguish functional T cell subsets, with CD39-CD69- stem-like T cells associated with superior therapeutic responses compared to terminally differentiated CD39+CD69+ cells 5. Additionally, CD69 contributes to inflammatory pathology through interactions with myosin light chains in airway inflammation 6 and by inducing vascular leak through S1PR1 downregulation in activated endothelial cells 7.

Sources cited
1
CD69 is a type II C-lectin that appears within one hour of T cell activation and acts as a costimulatory molecule
PMID: 7804122
2
CD69+ memory T cells define tissue-resident memory T cells with distinct transcriptional profiles in mucosal and lymphoid tissues
PMID: 28930685
3
CD69 regulates tissue residency by facilitating S1PR1 internalization and preventing sphingosine-1-phosphate-mediated tissue egress
PMID: 40375826
4
CD69 regulates T cell differentiation, including Th17 and regulatory T cell development through various signaling pathways
PMID: 28475283
5
CD39-CD69- stem-like T cells are associated with superior cancer immunotherapy responses compared to CD39+CD69+ differentiated cells
PMID: 33303615
6
CD69 contributes to airway inflammation through interactions with myosin light chain proteins
PMID: 28658550
7
CD69 in activated endothelial cells induces vascular leak by downregulating S1PR1 signaling
PMID: 40617350
Disease Associationsⓘ20
hypothyroidismOpen Targets
0.48Moderate
thyroid diseaseOpen Targets
0.44Moderate
myxedemaOpen Targets
0.42Moderate
type 1 diabetes mellitusOpen Targets
0.41Moderate
Hashimoto's thyroiditisOpen Targets
0.35Weak
neurodegenerative diseaseOpen Targets
0.29Weak
chronic lymphocytic leukemiaOpen Targets
0.21Weak
multiple sclerosisOpen Targets
0.19Weak
autoimmune diseaseOpen Targets
0.16Weak
neoplasmOpen Targets
0.12Weak
colitisOpen Targets
0.10Weak
acute myeloid leukemiaOpen Targets
0.10Weak
SepsisOpen Targets
0.10Suggestive
rheumatoid arthritisOpen Targets
0.09Suggestive
musculoskeletal system diseaseOpen Targets
0.09Suggestive
glioblastoma multiformeOpen Targets
0.09Suggestive
non-small cell lung carcinomaOpen Targets
0.09Suggestive
systemic lupus erythematosusOpen Targets
0.08Suggestive
systemic sclerodermaOpen Targets
0.08Suggestive
graft versus host diseaseOpen Targets
0.08Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LCKProtein interaction100%S1PR1Protein interaction100%IFNGProtein interaction99%PTPRCProtein interaction98%FOXP3Protein interaction98%IL10Protein interaction98%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
5%
Liver
1%
Ovary
0%
Heart
0%
Brain
0%
Gene Interaction Network
Click a node to explore
CD69LCKS1PR1IFNGPTPRCFOXP3IL10
PROTEIN STRUCTURE
Preparing viewer…
PDB3HUP · 1.37 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.86LoF Tolerant
pLIⓘ
0.42Tolerant
Observed/Expected LoF0.38 [0.18–0.86]
RankingsWhere CD69 stands among ~20K protein-coding genes
  • #4,575of 20,598
    Most Researched104 · top quartile
  • #7,530of 17,882
    Most Constrained (LOEUF)0.86
Genes detectedCD69
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
CD69: from activation marker to metabolic gatekeeper.
PMID: 28475283
Eur J Immunol · 2017
1.00
2
Stem-like CD8 T cells mediate response of adoptive cell immunotherapy against human cancer.
PMID: 33303615
Science · 2020
0.90
3
Human Tissue-Resident Memory T Cells Are Defined by Core Transcriptional and Functional Signatures in Lymphoid and Mucosal Sites.
PMID: 28930685
Cell Rep · 2017
0.80
4
Surface CD69-Negative CD4 and CD8 Bone Marrow-Resident Human Memory T Cells.
PMID: 40375826
Eur J Immunol · 2025
0.70
5
The activation antigen CD69.
PMID: 7804122
Stem Cells · 1994
0.60