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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CDH9
cadherin 9
Chromosome 5 · 5p14.1
NCBI Gene: 1007Ensembl: ENSG00000113100.10HGNC: HGNC:1768UniProt: Q9ULB4
23PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
synaptic membrane adhesioncell-cell adhesion mediated by cadherinadherens junctioncell morphogenesisintelligencemajor depressive disordergastric ulcerhemorrhage
✦AI Summary

CDH9 (cadherin 9) is a calcium-dependent cell adhesion protein that plays critical roles in neural development and disease. As a type II cadherin, CDH9 mediates homophilic cell-cell adhesion and contributes to cell sorting during development 1. In the developing cerebellum, CDH9 exhibits segregated expression patterns in Purkinje cell subpopulations, with complementary expression to CDH11 in autism-relevant regions like lobules VI/VII of the vermis 2. This spatial expression pattern suggests distinct but coordinated functions in regulating autism-relevant neural circuit wiring 2. CDH9 has significant disease associations, particularly with neuropsychiatric disorders. Genome-wide association studies have linked CDH9 with autism spectrum disorders 13, though population-specific variations exist in these associations 3. Additionally, CDH9 variants are associated with lobar intracerebral hemorrhage through amyloid-related mechanisms, with differential expression in brain regions characteristically affected by cerebral amyloid angiopathy 4. In cancer biology, CDH9 functions as a metastasis suppressor, where its inhibition enhances cell migration in breast cancer models 5. The gene also shows altered expression in blastocysts from infertile patients and responds to microRNA regulation 67, indicating broader roles in development and cellular regulation.

Sources cited
1
CDH9 is associated with autism and mediates calcium-dependent cell adhesion in neural development
PMID: 22765916
2
CDH9 shows segregated expression in developing cerebellum Purkinje cells with complementary pattern to CDH11 in autism-relevant regions
PMID: 31046797
3
CDH9 association with autism spectrum disorders varies between populations
PMID: 33076578
4
CDH9 variants are associated with lobar intracerebral hemorrhage through amyloid-related mechanisms
PMID: 36705426
5
CDH9 functions as a metastasis suppressor in breast cancer
PMID: 28855549
6
CDH9 expression is altered in blastocysts from infertile patients
PMID: 28595284
7
CDH9 expression increases following miR-182 knockdown in cancer metastasis regulation
PMID: 24519909
Disease Associationsⓘ20
intelligenceOpen Targets
0.39Weak
major depressive disorderOpen Targets
0.39Weak
gastric ulcerOpen Targets
0.32Weak
hemorrhageOpen Targets
0.32Weak
mathematical abilityOpen Targets
0.31Weak
subarachnoid hemorrhageOpen Targets
0.28Weak
obesityOpen Targets
0.27Weak
smoking initiationOpen Targets
0.20Weak
placenta praeviaOpen Targets
0.19Weak
ankylosing spondylitisOpen Targets
0.19Weak
post term pregnancyOpen Targets
0.19Weak
cesarean sectionOpen Targets
0.18Weak
Self-injurious behaviorOpen Targets
0.18Weak
breast carcinomaOpen Targets
0.18Weak
corneal diseaseOpen Targets
0.17Weak
pituitary gland diseaseOpen Targets
0.17Weak
cholelithiasisOpen Targets
0.17Weak
response to xenobiotic stimulusOpen Targets
0.17Weak
exostosisOpen Targets
0.17Weak
joint diseaseOpen Targets
0.16Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CDH22Shared pathway90%CDH24Shared pathway90%CDH26Shared pathway90%CDH10Protein interaction84%CDH12Protein interaction84%CDH6Protein interaction83%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
2%
Ovary
0%
Heart
0%
Lung
0%
Liver
0%
Gene Interaction Network
Click a node to explore
CDH9CDH22CDH24CDH26CDH10CDH12CDH6
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9ULB4
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.58Moderately Constrained
pLIⓘ
0.66Intermediate
Observed/Expected LoF0.38 [0.26–0.58]
RankingsWhere CDH9 stands among ~20K protein-coding genes
  • #13,385of 20,598
    Most Researched23
  • #3,850of 17,882
    Most Constrained (LOEUF)0.58 · top quartile
Genes detectedCDH9
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Cadherins and neuropsychiatric disorders.
PMID: 22765916
Brain Res · 2012
1.00
2
Segregated expressions of autism risk genes Cdh11 and Cdh9 in autism-relevant regions of developing cerebellum.
PMID: 31046797
Mol Brain · 2019
0.90
3
Pleiotropy analysis between lobar intracerebral hemorrhage and CSF β-amyloid highlights new and established associations.
PMID: 36705426
Int J Stroke · 2023
0.80
4
Infertility diagnosis has a significant impact on the transcriptome of developing blastocysts.
PMID: 28595284
Mol Hum Reprod · 2017
0.70
5
Sp1-mediated microRNA-182 expression regulates lung cancer progression.
PMID: 24519909
Oncotarget · 2014
0.60