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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CETN3
centrin 3
Chromosome 5 · 5q14.3
NCBI Gene: 1070Ensembl: ENSG00000153140.10HGNC: HGNC:1868UniProt: E5RFM2
60PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
centrosomeprotein bindingnuclear pore nuclear baskettranscription export complex 2intelligenceGenu varumAbnormality of the skeletal systemGenu valgum
✦AI Summary

CETN3 is a calcium-binding centrin protein with dual roles in centrosome assembly and RNA processing. As a component of the TREX-2 complex, CETN3 mediates mRNA export from the nucleus through nuclear pores 1. At the centrosome, CETN3 functions as a negative regulator of the Mps1 kinase, inhibiting its autophosphorylation and antagonizing centrin 2-dependent centriole assembly and centrosome duplication 2. Additionally, CETN3 participates in RNA splicing regulation; the CETN3-S splice isoform is controlled by SRSF2 and promotes colorectal cancer cell proliferation through G1/S cell cycle progression 3. Loss of CETN3 function causes primary microcephaly through impaired centrosome assembly in neural stem/progenitor cells and disrupted interaction with RNA splicing machinery critical for brain development 4. In cancer, CETN3 loss via 5q deletion in basal-like breast cancer correlates with elevated EGFR signaling 15, while miR-410 negatively regulates CETN3 expression to promote tumorigenesis in certain contexts 6. These findings establish CETN3 as a multifunctional regulator linking centrosome dynamics, RNA metabolism, and neurodevelopment, with emerging roles in cancer biology.

Sources cited
1
Loss of CETN3 via 5q deletion in breast cancer connects to elevated EGFR expression
PMID: 27251275
2
CETN3 inhibits Mps1 kinase activity and antagonizes centrin 2-dependent centrosome duplication
PMID: 26354417
3
CETN3-S splice isoform regulated by SRSF2 promotes colorectal cancer cell proliferation through cell cycle progression
PMID: 36623729
4
CETN3 deficiency causes primary microcephaly through impaired centrosome assembly and disrupted RNA splicing in neural stem/progenitor cells
PMID: 40926052
5
CETN3 loss from 5q deletion in basal-like breast cancer drives EGFR overexpression
PMID: 27354270
6
miR-410 negatively regulates CETN3 to promote cancer development
PMID: 30086210
Disease Associationsⓘ20
intelligenceOpen Targets
0.17Weak
Genu varumOpen Targets
0.16Weak
Abnormality of the skeletal systemOpen Targets
0.16Weak
Genu valgumOpen Targets
0.15Weak
schizophreniaOpen Targets
0.13Weak
complicationOpen Targets
0.13Weak
jaw diseaseOpen Targets
0.13Weak
ovarian dysfunctionOpen Targets
0.13Weak
DermatochalasisOpen Targets
0.12Weak
medical procedureOpen Targets
0.12Weak
trauma complicationOpen Targets
0.12Weak
attention deficit hyperactivity disorderOpen Targets
0.12Weak
autism spectrum disorderOpen Targets
0.12Weak
atrial fibrillationOpen Targets
0.11Weak
cartilage diseaseOpen Targets
0.11Weak
Alzheimer diseaseOpen Targets
0.02Suggestive
colorectal carcinomaOpen Targets
0.02Suggestive
StrabismusOpen Targets
0.02Suggestive
chronic fatigue syndromeOpen Targets
0.02Suggestive
Abnormal sperm morphologyOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NUP98Protein interaction100%NUP153Protein interaction100%SFI1Protein interaction100%TPRProtein interaction99%MCM3APProtein interaction96%MAD2L1Protein interaction93%
Tissue Expression6 tissues
Heart
100%
Brain
69%
Bone Marrow
67%
Ovary
63%
Liver
36%
Lung
24%
Gene Interaction Network
Click a node to explore
CETN3NUP98NUP153SFI1TPRMCM3APMAD2L1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt O15182
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.75LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.03 [0.60–1.75]
RankingsWhere CETN3 stands among ~20K protein-coding genes
  • #7,639of 20,598
    Most Researched60
  • #16,340of 17,882
    Most Constrained (LOEUF)1.75
Genes detectedCETN3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Proteogenomics connects somatic mutations to signalling in breast cancer.
PMID: 27251275
Nature · 2016
1.00
2
Comprehensive analysis of RNA-binding protein SRSF2-dependent alternative splicing signature in malignant proliferation of colorectal carcinoma.
PMID: 36623729
J Biol Chem · 2023
0.90
3
CETN3 deficiency induces microcephaly by disrupting neural stem/progenitor cell fate through impaired centrosome assembly and RNA splicing.
PMID: 40926052
EMBO Mol Med · 2025
0.80
4
Role of microRNA-410 in molecular oncology: A double edged sword.
PMID: 30086210
J Cell Biochem · 2018
0.70
5
ADGRV1 is implicated in myoclonic epilepsy.
PMID: 29266188
Epilepsia · 2018
0.60