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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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TPR
translocated promoter region, nuclear basket protein
Chromosome 1 · 1q31.1
NCBI Gene: 7175Ensembl: ENSG00000047410.14HGNC: HGNC:12017UniProt: P12270
224PubMed Papers
21Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub GeneOncogeneTransporter
RESEARCH IMPACT
Trending
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
positive regulation of intracellular protein transportprotein import into nucleusprotein export from nucleusnuclear pore organizationHIV infectioninfluenzaviral diseaseCamptodactyly-arthropathy-coxa-vara-pericarditis syndrome
✦AI Summary

TPR (translocated promoter region) is a major structural protein of the nuclear pore complex (NPC) that forms the basket-like structure on the nucleoplasmic side 1. Beyond its scaffolding role in nucleocytoplasmic transport, TPR functions in multiple critical cellular processes. It regulates nuclear export of unspliced mRNAs and negatively modulates translation initiation of CTE-containing transcripts [UniProt]. TPR also protects cells from RNA-mediated replication stress by coordinating transcription, splicing, and mRNA export machinery through interactions with TREX-2 complex components like GANP 2. During mitosis, TPR acts as a spatial regulator of the spindle-assembly checkpoint, recruiting checkpoint proteins to unattached kinetochores [UniProt]. TPR is essential for heterochromatin organization at the nuclear periphery and mediates the formation of cytoplasmic chr1 fragments during senescence, which activates innate immune signaling and the senescence-associated secretory phenotype 3. The protein's N-terminal TPR domain enables interactions with other proteins like G3BP1 in stress granule regulation 4. Dysregulation of TPR is implicated in cancer development, and mutations cause autosomal recessive intellectual developmental disorder 79 1, highlighting its importance in genomic stability and neurological function.

Sources cited
1
TPR as NPC architectural component, roles in cancer, aging, and p53 signaling
PMID: 24563354
2
TPR protects from replication stress and links nucleoporins to transcription/splicing/export machinery
PMID: 34168151
3
TPR required for cytoplasmic chromatin fragment formation and NF-κB activation during senescence
PMID: 39625470
4
TPR domain mediates protein interactions in stress granule regulation
PMID: 40536321
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ21
HIV infectionOpen Targets
0.54Moderate
influenzaOpen Targets
0.54Moderate
viral diseaseOpen Targets
0.53Moderate
Camptodactyly-arthropathy-coxa-vara-pericarditis syndromeOpen Targets
0.50Moderate
cancerOpen Targets
0.49Moderate
papillary thyroid carcinomaOpen Targets
0.37Weak
thyroid gland oncocytic adenomaOpen Targets
0.37Weak
autosomal recessive non-syndromic intellectual disabilityOpen Targets
0.37Weak
Benign Thyroid Gland NeoplasmOpen Targets
0.37Weak
COVID-19Open Targets
0.37Weak
Follicular Variant Thyroid Gland Papillary CarcinomaOpen Targets
0.37Weak
HistiocytosisOpen Targets
0.37Weak
Thyroid Gland Oncocytic Follicular CarcinomaOpen Targets
0.37Weak
lung adenocarcinomaOpen Targets
0.28Weak
follicular thyroid carcinomaOpen Targets
0.28Weak
medullary thyroid gland carcinomaOpen Targets
0.28Weak
neurodegenerative diseaseOpen Targets
0.27Weak
hepatocellular carcinomaOpen Targets
0.23Weak
small cell lung carcinomaOpen Targets
0.20Weak
gastric carcinomaOpen Targets
0.19Weak
Intellectual developmental disorder, autosomal recessive 79UniProt
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ALYREFProtein interaction100%NDC1Protein interaction99%SEH1LProtein interaction99%CETN2Protein interaction99%CETN3Protein interaction99%MAD2L1Protein interaction99%
Tissue Expression6 tissues
Bone Marrow
100%
Heart
71%
Ovary
67%
Lung
66%
Brain
52%
Liver
43%
Gene Interaction Network
Click a node to explore
TPRALYREFNDC1SEH1LCETN2CETN3MAD2L1
PROTEIN STRUCTURE
Preparing viewer…
PDB5TO5 · 2.50 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.20Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.16 [0.12–0.20]
RankingsWhere TPR stands among ~20K protein-coding genes
  • #1,826of 20,598
    Most Researched224 · top 10%
  • #467of 17,882
    Most Constrained (LOEUF)0.20 · top 5%
Genes detectedTPR
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
The human nucleoporin Tpr protects cells from RNA-mediated replication stress.
PMID: 34168151
Nat Commun · 2021
1.00
2
Identification and Functional Analysis of Tomato
PMID: 33451131
Int J Mol Sci · 2021
0.90
3
Histone Demethylase UTX Suppresses Tumor Cell Proliferation by Regulating Stress Granules.
PMID: 40536321
Adv Sci (Weinh) · 2025
0.80
4
Platelet releasates mitigate the endotheliopathy of trauma.
PMID: 38764145
J Trauma Acute Care Surg · 2024
0.76
5
Spatio-genetically coordinated TPR domain-containing proteins modulate c-di-GMP signaling in Vibrio vulnificus.
PMID: 40668869
PLoS Pathog · 2025
0.72