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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CLINT1
clathrin interactor 1
Chromosome 5 · 5q33.3
NCBI Gene: 9685Ensembl: ENSG00000113282.15HGNC: HGNC:23186UniProt: A0A0S2Z4Y4
156PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
clathrin bindingmembranecadherin bindingprotein bindingdengue diseaseAlzheimer diseaseneurodegenerative diseasemathematical ability
✦AI Summary

CLINT1 (clathrin interactor 1) is an ENTH domain-containing cargo adaptor protein that functions in vesicle trafficking and membrane organization. Functionally, CLINT1 binds to phosphatidylinositol 4,5-bisphosphate (PIP2)-enriched membranes and directly recognizes SNARE proteins, particularly the H(abc) domain of Vti1b, facilitating their sorting into clathrin-coated vesicles 1. This interaction mediates bidirectional Golgi-to-endosome trafficking and stimulates clathrin assembly 2. Mechanistically, CLINT1 is phosphorylated by the kinase BIKE at threonine 294, a modification that enhances its binding to viral and cellular proteins and regulates its trafficking functions 2. Clinically, CLINT1 dysfunction is associated with multiple disease states. Loss-of-function mutations in zebrafish cause psoriasis-like phenotypes including epithelial hyperproliferation, chr5 inflammation, and impaired hemidesmosome formation 3. CLINT1 is identified as a target gene regulated by GWAS variants associated with atopic dermatitis and psoriasis 4. Additionally, CLINT1 expression is modulated in fibrotic conditions and is associated with nintedanib treatment in idiopathic pulmonary fibrosis 5. CLINT1 also plays a role in dengue virus infection by mediating viral assembly and egress through BIKE-dependent phosphorylation 2, suggesting potential significance in viral pathogenesis.

Sources cited
1
CLINT1 directly recognizes SNARE proteins (Vti1b H(abc) domain) and mediates their sorting into clathrin-coated vesicles
PMID: 18033301
2
CLINT1 mutations cause psoriasis-like phenotypes with epidermal hyperproliferation, inflammation, and impaired cell-cell contacts
PMID: 19570844
3
BIKE phosphorylates CLINT1 at threonine 294, regulating its interaction with dengue virus NS3 protein and viral infection
PMID: 35452674
4
CLINT1 is a target gene of GWAS variants associated with atopic dermatitis and psoriasis
PMID: 33069716
5
CLINT1 expression is modulated by nintedanib treatment in fibrotic conditions
PMID: 35197532
Disease Associationsⓘ20
dengue diseaseOpen Targets
0.39Weak
Alzheimer diseaseOpen Targets
0.37Weak
neurodegenerative diseaseOpen Targets
0.31Weak
mathematical abilityOpen Targets
0.30Weak
hypertensionOpen Targets
0.30Weak
smoking initiationOpen Targets
0.29Weak
restless legs syndromeOpen Targets
0.25Weak
Meniere diseaseOpen Targets
0.24Weak
androgenetic alopeciaOpen Targets
0.23Weak
psoriasisOpen Targets
0.22Weak
benign prostatic hyperplasiaOpen Targets
0.20Weak
type 1 diabetes mellitusOpen Targets
0.20Weak
Increased blood pressureOpen Targets
0.19Weak
HematocheziaOpen Targets
0.19Weak
diabetes mellitusOpen Targets
0.19Weak
type 2 diabetes mellitusOpen Targets
0.19Weak
cardiovascular diseaseOpen Targets
0.19Weak
COVID-19Open Targets
0.19Weak
Hodgkins lymphomaOpen Targets
0.19Weak
response to radiationOpen Targets
0.18Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
STON2Protein interaction100%VTI1BProtein interaction100%AP1M2Protein interaction99%SNAP91Protein interaction96%GGA2Protein interaction93%EPN2Protein interaction92%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
46%
Lung
33%
Heart
32%
Ovary
21%
Brain
20%
Gene Interaction Network
Click a node to explore
CLINT1STON2VTI1BAP1M2SNAP91GGA2EPN2
PROTEIN STRUCTURE
Preparing viewer…
PDB1XGW · 1.90 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.42Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.26 [0.17–0.42]
RankingsWhere CLINT1 stands among ~20K protein-coding genes
  • #2,881of 20,598
    Most Researched156 · top quartile
  • #2,204of 17,882
    Most Constrained (LOEUF)0.42 · top quartile
Genes detectedCLINT1
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
The ENTH domain protein Clint1 is required for epidermal homeostasis in zebrafish.
PMID: 19570844
Development · 2009
1.00
2
The cargo adapter protein CLINT1 is phosphorylated by the Numb-associated kinase BIKE and mediates dengue virus infection.
PMID: 35452674
J Biol Chem · 2022
0.90
3
A genome landscape of SRSF3-regulated splicing events and gene expression in human osteosarcoma U2OS cells.
PMID: 26704980
Nucleic Acids Res · 2016
0.80
4
Gamma-Aminobutyric Acid Type A Receptor Subunit Pi is a potential chemoresistance regulator in colorectal cancer.
PMID: 36696022
Mol Biol Rep · 2023
0.70
5
Integrated bioinformatics analysis identifies established and novel TGFβ1-regulated genes modulated by anti-fibrotic drugs.
PMID: 35197532
Sci Rep · 2022
0.60