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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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CLK4
CDC like kinase 4
Chromosome 5 · 5q35.3
NCBI Gene: 57396Ensembl: ENSG00000113240.15HGNC: HGNC:13659UniProt: Q9HAZ1
31PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Kinase
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
regulation of RNA splicingprotein bindingprotein serine/threonine kinase activityprotein tyrosine kinase activityneuroinflammatory disorderesophageal squamous cell carcinomaprostate carcinomacardiac hypertrophy
✦AI Summary

CLK4 (CDC-like kinase 4) is a dual-specificity kinase that phosphorylates both serine/threonine and tyrosine residues on spliceosomal proteins, particularly serine- and arginine-rich (SR) proteins including SRSF1, SRSF3, SRSF4, and SRSF6 1. The kinase regulates alternative splicing of key genes including MAPT/TAU and tissue factor (F3) pre-mRNA, enabling SR proteins to control RNA splicing processes 1. CLK4 is expressed across all human tissues with prominent expression in liver, kidney, brain, and heart 1. Beyond splicing, CLK4 functions in metabolic regulation and redox homeostasis; low CLK4 expression promotes purine synthesis and affects NADPH/NADP+ ratios through MITF-dependent mechanisms 2. CLK4 exhibits redox sensitivity, with methionine oxidation impairing kinase activity 2. Clinically, CLK4 variants associate with chr5 and sleep-related traits 3. Elevated CLK4 expression correlates with poor survival in triple-negative breast cancer, where it promotes epithelial-mesenchymal transition and metastasis via TGF-β pathway activation 4. In pancreatic cancer, CLK4 inhibition suppresses cell growth, induces G2/M arrest, and modulates alternative splicing of cancer-promoting genes 5. These findings establish CLK4 as a therapeutic target in cancer and potentially sleep disorders 6.

Sources cited
1
CLK4 phosphorylates SR proteins, autophosphorylates, shows broad tissue expression with prominent liver/kidney/brain/heart abundance, and localizes to chromosome 5q35
PMID: 11170754
2
CLK4 genetic variants associate with chronotype in large exome-wide association study of sleep traits
PMID: 38177695
3
CLK4 elevation correlates with poor survival in triple-negative breast cancer; CLK4 inhibition reduces EMT genes, metastasis, and TGF-β-induced invasion
PMID: 35046528
4
CLK4 regulates metabolic reprogramming and redox homeostasis in esophageal carcinoma through MITF phosphorylation; methionine oxidation impairs kinase activity
PMID: 35092699
5
CLK4 inhibitor suppresses pancreatic cancer cell growth, phosphorylation of SRSF4/6, induces G2/M arrest and alters alternative splicing
PMID: 40126184
6
CLK4 is a therapeutic target in cancer and neurodegenerative diseases; reviews advances in CLK4 inhibitor development
PMID: 40095342
Disease Associationsⓘ20
neuroinflammatory disorderOpen Targets
0.35Weak
esophageal squamous cell carcinomaOpen Targets
0.07Suggestive
prostate carcinomaOpen Targets
0.06Suggestive
cardiac hypertrophyOpen Targets
0.05Suggestive
heart failureOpen Targets
0.04Suggestive
neoplasmOpen Targets
0.03Suggestive
cancerOpen Targets
0.02Suggestive
tonsillitisOpen Targets
0.02Suggestive
glioblastoma multiformeOpen Targets
0.02Suggestive
ovarian carcinomaOpen Targets
0.02Suggestive
triple-negative breast cancerOpen Targets
0.02Suggestive
acute myeloid leukemiaOpen Targets
0.01Suggestive
breast cancerOpen Targets
0.01Suggestive
esophageal carcinomaOpen Targets
0.01Suggestive
lung adenocarcinomaOpen Targets
0.01Suggestive
male infertilityOpen Targets
0.01Suggestive
lung cancerOpen Targets
0.00Suggestive
hypertrophyOpen Targets
0.00Suggestive
metabolic diseaseOpen Targets
0.00Suggestive
theileriasisOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
HNRNPH2Shared pathway100%RBM12Shared pathway100%MBNL2Shared pathway100%ESRP1Shared pathway100%RBM38Shared pathway100%MBNL3Shared pathway100%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
48%
Liver
42%
Lung
34%
Heart
32%
Brain
15%
Gene Interaction Network
Click a node to explore
CLK4HNRNPH2RBM12MBNL2ESRP1RBM38MBNL3
PROTEIN STRUCTURE
Preparing viewer…
PDB6FYV · 2.46 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.87LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.61 [0.44–0.87]
RankingsWhere CLK4 stands among ~20K protein-coding genes
  • #11,686of 20,598
    Most Researched31
  • #7,669of 17,882
    Most Constrained (LOEUF)0.87
Genes detectedCLK4
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Exome sequencing identifies genes associated with sleep-related traits.
PMID: 38177695
Nat Hum Behav · 2024
1.00
2
Increased dosage of DYRK1A leads to congenital heart defects in a mouse model of Down syndrome.
PMID: 38266108
Sci Transl Med · 2024
0.90
3
Identification and Biological Evaluation of a Novel CLK4 Inhibitor Targeting Alternative Splicing in Pancreatic Cancer Using Structure-Based Virtual Screening.
PMID: 40126184
Adv Sci (Weinh) · 2025
0.80
4
Molecular characterization of a cDNA encoding functional human CLK4 kinase and localization to chromosome 5q35 [correction of 4q35].
PMID: 11170754
Genomics · 2001
0.70
5
Targeting CLK4 inhibits the metastasis and progression of breast cancer by inactivating TGF-β pathway.
PMID: 35046528
Cancer Gene Ther · 2022
0.60