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GeneE
4 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CLRN3
clarin 3
Chromosome 10 Β· 10q26.2
NCBI Gene: 119467Ensembl: ENSG00000180745.6HGNC: HGNC:20795UniProt: Q8NCR9
18PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingextracellular exosomesensory perception of soundmembranemouth diseaseankylosing spondylitisimmune system diseaseplacenta praevia
✦AI Summary

CLRN3 (clarin 3) is a cell-surface glycoprotein with emerging roles in cancer immunology and cellular differentiation. Primary Function: CLRN3 functions as a cell-surface marker and protein-binding molecule involved in cell identification and differentiation processes 1. Mechanism: CLRN3 is highly enriched during late-stage hepatocyte differentiation from induced pluripotent stem cells and facilitates purification of homogeneous hepatocyte populations through fluorescence-activated cell sorting 1. Disease Relevance: CLRN3 has been identified as a significant factor in multiple malignancies. In colorectal cancer, CLRN3 expression correlates with CD8+ T-cell infiltration and tumor progression; CLRN3 knockdown attenuates malignant biological behavior while overexpression promotes it 2. In endometrial carcinoma, CLRN3 represents a methylation-driven gene with disease-specific dysregulation compared to breast cancer 3. Additionally, a CLRN3 genetic variant (rs6482992) is associated with cognitive outcomes in Parkinson's disease patients 4. Clinical Significance: CLRN3 shows promise as a biomarker for cancer prognosis and immunotherapy response prediction, particularly in colorectal cancer risk stratification based on CD8+ T-cell-related gene signatures 2.

Sources cited
1
CLRN3 knockdown attenuates malignant biological behavior in CRC cells while overexpression promotes it; identified in a CD8+ T-cell-related prognostic model
PMID: 39199281
2
CLRN3 is a cell-surface N-glycoprotein highly enriched during hepatocyte differentiation and serves as a marker for FACS purification of iPSC-derived hepatocytes
PMID: 27569060
3
SNP rs6482992 in CLRN3 gene is associated with cognitive outcomes in Parkinson's disease patients
PMID: 22658654
4
CLRN3 is a methylation-driven gene with disease-specific dysregulation in uterine corpus endometrial carcinoma compared to breast cancer
PMID: 32397815
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜20
mouth diseaseOpen Targets
0.18Weak
ankylosing spondylitisOpen Targets
0.12Weak
immune system diseaseOpen Targets
0.10Weak
placenta praeviaOpen Targets
0.10Suggestive
preeclampsiaOpen Targets
0.10Suggestive
Barrett's esophagusOpen Targets
0.09Suggestive
placental retentionOpen Targets
0.08Suggestive
esophageal adenocarcinomaOpen Targets
0.06Suggestive
colorectal carcinomaOpen Targets
0.05Suggestive
Phenotypic abnormalityOpen Targets
0.05Suggestive
COVID-19Open Targets
0.05Suggestive
pyogenic granulomaOpen Targets
0.05Suggestive
disorder of earOpen Targets
0.04Suggestive
hypertensionOpen Targets
0.04Suggestive
systemic lupus erythematosusOpen Targets
0.03Suggestive
ocular hypotensionOpen Targets
0.03Suggestive
intestinal obstructionOpen Targets
0.03Suggestive
renal osteodystrophyOpen Targets
0.02Suggestive
drug allergyOpen Targets
0.02Suggestive
benign chondrogenic neoplasmOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar β†—
Related Genes
ZNF354AShared pathway100%LRIG2Shared pathway100%LRIG1Shared pathway100%GRXCR2Shared pathway100%CEACAM16Shared pathway100%LHFPL3Shared pathway100%
Tissue Expression6 tissues
Liver
100%
Brain
0%
Bone Marrow
0%
Lung
0%
Ovary
0%
Heart
0%
Gene Interaction Network
Click a node to explore
CLRN3ZNF354ALRIG2LRIG1GRXCR2CEACAM16LHFPL3
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q8NCR9
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.17LoF Tolerant
pLIβ“˜
0.01Tolerant
Observed/Expected LoF0.67 [0.40–1.17]
RankingsWhere CLRN3 stands among ~20K protein-coding genes
  • #14,671of 20,598
    Most Researched18
  • #12,199of 17,882
    Most Constrained (LOEUF)1.17
Genes detectedCLRN3
Sources retrieved4 papers
Response timeβ€”
πŸ“„ Sources
4
1
A CLRN3-Based CD8
PMID: 39199281
Biomolecules Β· 2024
1.00
2
Mapping the Cell-Surface N-Glycoproteome of Human Hepatocytes Reveals Markers for Selecting a Homogeneous Population of iPSC-Derived Hepatocytes.
PMID: 27569060
Stem Cell Reports Β· 2016
0.75
3
Genomic determinants of motor and cognitive outcomes in Parkinson's disease.
PMID: 22658654
Parkinsonism Relat Disord Β· 2012
0.50
4
A 14-Methylation-Driven Differentially Expressed RNA as a Signature for Overall Survival Prediction in Patients with Uterine Corpus Endometrial Carcinoma.
PMID: 32397815
DNA Cell Biol Β· 2020
0.25