HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CNOT4
CCR4-NOT transcription complex subunit 4
Chromosome 7 · 7q33
NCBI Gene: 4850Ensembl: ENSG00000080802.22HGNC: HGNC:7880UniProt: O95628
61PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
CCR4-NOT complexRNA bindingubiquitin-protein transferase activityprotein bindingneurodegenerative diseaselysosomal storage diseasesmoking initiationmathematical ability
✦AI Summary

CNOT4 is an E3 ubiquitin ligase and component of the CCR4-NOT transcription complex with multifaceted roles in gene regulation and cellular quality control. Functionally, CNOT4 ubiquitinates diverse substrates including methylated RBM15, stalled ribosomes, and the transcriptional regulator PAF1, promoting their degradation via the 26S proteasome 123. Within mitochondrial quality control, CNOT4 ubiquitinates ABCE1 upon mitochondrial damage, recruiting autophagy machinery to initiate mitophagy 4. CNOT4 also regulates mRNA stability through deadenylation pathways; surprisingly, CNOT4 depletion accelerates global mRNA decay while increasing transcription, opposing the effects of core complex scaffold CNOT1 56. Disease relevance is substantial: in hepatocellular carcinoma, CNOT4 degradation via the TNKS1BP1-TRIM21 axis suppresses JAK2/STAT3 signaling, promoting immune evasion and anti-PD-L1 resistance 7. In pancreatic cancer, lncRNA RP11-161H23.5 enhances CNOT4-mediated HLA-A mRNA degradation to evade immune surveillance 8. Conversely, CNOT4 overexpression suppresses non-small cell lung cancer progression 2. CNOT4 also coordinates with ZNF598 in mitochondrial stress-responsive translation quality control, protecting against neurodegeneration 9. These findings establish CNOT4 as a critical node regulating proteostasis, mRNA metabolism, and immune function with significant therapeutic implications across malignancies.

Sources cited
1
CNOT4 catalyzes ubiquitination of methylated RBM15
PMID: 26575292
2
CNOT4 ubiquitinates ABCE1 in PINK1-regulated mitophagy upon mitochondrial damage
PMID: 29861391
3
CNOT4 ubiquitinates stalled ribosomes and is required for CCR4-NOT ribosomal recognition
PMID: 37653243
4
CNOT4 promotes degradation of PAF1 and suppresses NSCLC progression
PMID: 37493105
5
CNOT4 depletion accelerates global mRNA decay and has opposite effects to CNOT1
PMID: 41161383
6
CNOT4 depletion accelerates mRNA decay while increasing transcription; CCR4-NOT silences retrotransposons
PMID: 39314347
7
TNKS1BP1-TRIM21-mediated CNOT4 degradation suppresses JAK2/STAT3 and promotes HCC immune evasion
PMID: 39019859
8
lncRNA RP11-161H23.5 enhances CNOT4-mediated HLA-A mRNA degradation in pancreatic cancer immune evasion
PMID: 39041344
9
CNOT4 ubiquitinates ZNF598 in ribosomal quality control during mitochondrial stress
PMID: 38388640
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.53Moderate
lysosomal storage diseaseOpen Targets
0.37Weak
smoking initiationOpen Targets
0.34Weak
mathematical abilityOpen Targets
0.33Weak
substance-related disorderOpen Targets
0.32Weak
major depressive disorderOpen Targets
0.32Weak
Abruptio PlacentaeOpen Targets
0.29Weak
psoriatic arthritisOpen Targets
0.29Weak
opioid use disorderOpen Targets
0.25Weak
alcohol-induced disordersOpen Targets
0.23Weak
Abnormal male internal genitalia morphologyOpen Targets
0.21Weak
hepatocellular carcinomaOpen Targets
0.06Suggestive
obesityOpen Targets
0.05Suggestive
lung cancerOpen Targets
0.04Suggestive
neoplasmOpen Targets
0.03Suggestive
osteoarthritis, hipOpen Targets
0.03Suggestive
systemic lupus erythematosusOpen Targets
0.02Suggestive
aortic valve stenosisOpen Targets
0.02Suggestive
connective tissue neoplasmOpen Targets
0.02Suggestive
non-small cell lung carcinomaOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
DDX6Protein interaction100%CNOT2Protein interaction100%CNOT3Protein interaction100%CNOT10Protein interaction100%CNOT1Protein interaction100%CNOT6Protein interaction100%
Tissue Expression6 tissues
Brain
100%
Heart
83%
Ovary
58%
Lung
53%
Bone Marrow
48%
Liver
47%
Gene Interaction Network
Click a node to explore
CNOT4DDX6CNOT2CNOT3CNOT10CNOT1CNOT6
PROTEIN STRUCTURE
Preparing viewer…
PDB1E4U · NMR
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.24Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.10 [0.05–0.24]
RankingsWhere CNOT4 stands among ~20K protein-coding genes
  • #7,543of 20,598
    Most Researched61
  • #679of 17,882
    Most Constrained (LOEUF)0.24 · top 5%
Genes detectedCNOT4
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
TNKS1BP1 facilitates ubiquitination of CNOT4 by TRIM21 to promote hepatocellular carcinoma progression and immune evasion.
PMID: 39019859
Cell Death Dis · 2024
1.00
2
Auxin-induced depletion of human CCR4-NOT subunits reveals opposing functions of CNOT1 and CNOT4 in mRNA metabolism.
PMID: 41161383
J Biol Chem · 2025
0.90
3
Specific recognition and ubiquitination of translating ribosomes by mammalian CCR4-NOT.
PMID: 37653243
Nat Struct Mol Biol · 2023
0.80
4
Human CCR4-NOT globally regulates gene expression and is a novel silencer of retrotransposon activation.
PMID: 39314347
bioRxiv · 2024
0.70
5
Extracellular vesicle-packaged lncRNA from cancer-associated fibroblasts promotes immune evasion by downregulating HLA-A in pancreatic cancer.
PMID: 39041344
J Extracell Vesicles · 2024
0.60