HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CNOT6
CCR4-NOT transcription complex subunit 6
Chromosome 5 · 5q35.3
NCBI Gene: 57472Ensembl: ENSG00000113300.14HGNC: HGNC:14099UniProt: Q9ULM6
63PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nuclear-transcribed mRNA catabolic process, no-go decaytranscription coactivator activityCCR4-NOT complexRNA exonuclease activityneurodegenerative diseaselysosomal storage diseaseadolescent idiopathic scoliosisglomerulonephritis
✦AI Summary

CNOT6 is a catalytic deadenylase subunit of the CCR4-NOT complex that plays crucial roles in mRNA degradation and cellular homeostasis. As a 3'-5' exonuclease, CNOT6 degrades poly(A) tails of mRNAs, contributing to mRNA decay and gene expression regulation 12. The protein demonstrates diverse cellular functions beyond mRNA degradation, including prevention of cellular senescence and promotion of cell survival. CNOT6 knockdown leads to enhanced DNA mismatch repair through increased stability of MMR gene transcripts 2, while its depletion can promote senescence through p53-p21 and p16-pRB pathways 3. Disease relevance includes associations with multiple cancer types, where CNOT6 variants show causal relationships with cancer risk 4. Specifically, the rs2453176 polymorphism in CNOT6 is associated with increased lung cancer susceptibility 5. The protein also functions in metabolic regulation, as ENO1 recruits CNOT6 to degrade IRP1 mRNA, affecting iron homeostasis and ferroptosis in hepatocellular carcinoma 1. Additionally, CNOT6 expression is regulated by cap-adjacent m6Am modification, demonstrating its integration into broader RNA modification networks 6. These findings establish CNOT6 as a critical regulator linking mRNA metabolism to cellular fate decisions and disease pathogenesis.

Sources cited
1
CNOT6 is recruited by ENO1 to accelerate IRP1 mRNA decay in cancer cells, affecting iron homeostasis and ferroptosis
PMID: 35121990
2
CNOT6 shows causal relationships with multiple cancer risks through Mendelian randomization analysis
PMID: 39215079
3
CNOT6 rs2453176 polymorphism is associated with increased lung cancer susceptibility and affects mRNA expression levels
PMID: 27805284
4
CNOT6 is targeted by miR-29c-3p and its knockdown promotes senescence through p53-p21 and p16-pRB pathways
PMID: 26792405
5
CNOT6 depletion upregulates DNA mismatch repair by increasing stability of MMR gene transcripts
PMID: 35159331
6
CNOT6 (Ccr4a) deadenylase subunit contributes to prevention of cell death and senescence
PMID: 21233283
7
CNOT6 expression is regulated by PCIF1-mediated m6Am modification affecting mRNA stability
PMID: 39451207
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.52Moderate
lysosomal storage diseaseOpen Targets
0.35Weak
adolescent idiopathic scoliosisOpen Targets
0.22Weak
glomerulonephritisOpen Targets
0.21Weak
Abnormality of the skeletal systemOpen Targets
0.05Suggestive
pneumonitisOpen Targets
0.03Suggestive
lung cancerOpen Targets
0.03Suggestive
coronary atherosclerosisOpen Targets
0.02Suggestive
ovarian cancerOpen Targets
0.02Suggestive
squamous cell carcinomaOpen Targets
0.01Suggestive
acute lymphoblastic leukemiaOpen Targets
0.01Suggestive
diabetes mellitusOpen Targets
0.01Suggestive
acute myeloid leukemiaOpen Targets
0.01Suggestive
hepatocellular carcinomaOpen Targets
0.01Suggestive
breast cancerOpen Targets
0.01Suggestive
infertilityOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
prostate cancerOpen Targets
0.01Suggestive
cancerOpen Targets
0.01Suggestive
metastatic neoplasmOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
DDX6Protein interaction100%MMP7Protein interaction100%CNOT4Protein interaction100%TOB1Protein interaction100%CPEB3Protein interaction100%CNOT1Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
77%
Ovary
60%
Lung
56%
Heart
54%
Liver
36%
Gene Interaction Network
Click a node to explore
CNOT6DDX6MMP7CNOT4TOB1CPEB3CNOT1
PROTEIN STRUCTURE
Preparing viewer…
PDB7AX1 · 3.30 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.32Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.19 [0.12–0.32]
RankingsWhere CNOT6 stands among ~20K protein-coding genes
  • #7,349of 20,598
    Most Researched63
  • #1,293of 17,882
    Most Constrained (LOEUF)0.32 · top 10%
Genes detectedCNOT6
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
ENO1 suppresses cancer cell ferroptosis by degrading the mRNA of iron regulatory protein 1.
PMID: 35121990
Nat Cancer · 2022
1.00
2
Mendelian randomization reveals potential causal relationships between cellular senescence-related genes and multiple cancer risks.
PMID: 39215079
Commun Biol · 2024
0.90
3
Susceptibility loci of CNOT6 in the general mRNA degradation pathway and lung cancer risk-A re-analysis of eight GWASs.
PMID: 27805284
Mol Carcinog · 2017
0.80
4
miR-29c-3p promotes senescence of human mesenchymal stem cells by targeting CNOT6 through p53-p21 and p16-pRB pathways.
PMID: 26792405
Biochim Biophys Acta · 2016
0.70
5
CNOT6: A Novel Regulator of DNA Mismatch Repair.
PMID: 35159331
Cells · 2022
0.60