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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
COL12A1
collagen type XII alpha 1 chain
Chromosome 6 Β· 6q13-q14.1
NCBI Gene: 1303Ensembl: ENSG00000111799.23HGNC: HGNC:2188UniProt: Q99715
78PubMed Papers
22Diseases
0Drugs
133Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
extracellular exosomeextracellular regionextracellular matrixGO:0005615Bethlem myopathy 2Ullrich congenital muscular dystrophy 2Abnormality of the skeletal systemCongenital muscular dystrophy, Ullrich type
✦AI Summary

COL12A1 encodes the alpha 1 chain of type XII collagen, a fibril-associated collagen with interrupted triple helices (FACIT) that plays a critical role in extracellular matrix organization and muscle function. Type XII collagen interacts with type I collagen-containing fibrils, where the COL1 domain associates with fibril surfaces while COL2 and NC3 domains localize in the perifibrillar matrix 1. The protein regulates collagen type I organization, creating structural frameworks that influence tissue mechanics and cellular behavior 1. Pathogenic variants in COL12A1 cause hereditary connective tissue disorders including Ullrich congenital muscular dystrophy 2 (recessive inheritance) and Bethlem myopathy 2 (dominant inheritance) 23. These conditions present with muscle weakness, joint hypermobility, and respiratory complications, ranging from severe neonatal hypotonia with respiratory failure to progressive muscular dystrophy 23. Molecular dynamics studies suggest that pathogenic variants destabilize the collagen XII trimer structure 2. Beyond muscle disorders, COL12A1 has emerging roles in cancer biology, where cancer-associated fibroblasts secrete collagen XII to alter collagen I organization, creating pro-invasive microenvironments that support metastatic dissemination in breast cancer 1. The gene is also implicated in satellite cell dysfunction, contributing to impaired muscle regeneration in neuromuscular disorders 4.

Sources cited
1
COL12A1 encodes collagen XII that regulates collagen type I organization and supports metastatic dissemination in breast cancer
PMID: 35933466
2
Pathogenic COL12A1 variants cause neonatal hypotonia and respiratory failure, with molecular dynamics showing trimer destabilization
PMID: 39985652
3
COL12A1 mutations cause myopathic Ehlers-Danlos syndrome with joint hypermobility and muscle weakness
PMID: 40508193
4
COL12A1 is involved in satellite cell dysfunction contributing to muscle regeneration impairment
PMID: 35302338
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜22
Bethlem myopathy 2Open Targets
0.80Strong
Ullrich congenital muscular dystrophy 2Open Targets
0.71Strong
Abnormality of the skeletal systemOpen Targets
0.55Moderate
Congenital muscular dystrophy, Ullrich typeOpen Targets
0.47Moderate
Ullrich congenital muscular dystrophyOpen Targets
0.45Moderate
keratoconusOpen Targets
0.43Moderate
Bethlem myopathyOpen Targets
0.41Moderate
genetic disorderOpen Targets
0.34Weak
neurodegenerative diseaseOpen Targets
0.29Weak
flatfootOpen Targets
0.28Weak
Global developmental delayOpen Targets
0.27Weak
Neurodevelopmental disorderOpen Targets
0.27Weak
Abnormality of connective tissueOpen Targets
0.26Weak
cataract 16 multiple typesOpen Targets
0.26Weak
placenta praeviaOpen Targets
0.20Weak
gastrointestinal diseaseOpen Targets
0.19Weak
Abruptio PlacentaeOpen Targets
0.17Weak
diabetic ketoacidosisOpen Targets
0.15Weak
Genu valgumOpen Targets
0.15Weak
Genu varumOpen Targets
0.15Weak
Bethlem myopathy 2UniProt
Ullrich congenital muscular dystrophy 2UniProt
Pathogenic Variants133
NM_004370.6(COL12A1):c.4738del (p.Ser1580fs)Pathogenic
Ullrich congenital muscular dystrophy 2;Bethlem myopathy 2|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 1580
NM_004370.5(COL12A1):c.7356delPathogenic
Ullrich congenital muscular dystrophy 2;Bethlem myopathy 2|not provided
β˜…β˜…β˜†β˜†2025
NM_004370.6(COL12A1):c.5302_5309del (p.Ser1768fs)Pathogenic
not provided|Bethlem myopathy 2;Ullrich congenital muscular dystrophy 2
β˜…β˜…β˜†β˜†2025β†’ Residue 1768
NM_004370.6(COL12A1):c.4418-1G>ALikely pathogenic
Ullrich congenital muscular dystrophy 2;Bethlem myopathy 2|Bethlem myopathy 2
β˜…β˜…β˜†β˜†2025
NM_004370.6(COL12A1):c.9103C>T (p.Arg3035Ter)Pathogenic
Ullrich congenital muscular dystrophy 2|not provided|Bethlem myopathy 2;Ullrich congenital muscular dystrophy 2|Bethlem myopathy 2
β˜…β˜…β˜†β˜†2025β†’ Residue 3035
NM_004370.6(COL12A1):c.5230+1G>ALikely pathogenic
Ullrich congenital muscular dystrophy 2;Bethlem myopathy 2|not provided
β˜…β˜…β˜†β˜†2025
NM_004370.6(COL12A1):c.5269C>T (p.Arg1757Ter)Pathogenic
Ullrich congenital muscular dystrophy 2;Bethlem myopathy 2|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 1757
NM_004370.6(COL12A1):c.8464C>T (p.Arg2822Ter)Pathogenic
Ullrich congenital muscular dystrophy 2|Ullrich congenital muscular dystrophy 2;Bethlem myopathy 2|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 2822
NM_004370.6(COL12A1):c.8100+3_8100+6delPathogenic
Ullrich congenital muscular dystrophy 2;Bethlem myopathy 2|not provided
β˜…β˜…β˜†β˜†2025
NM_004370.6(COL12A1):c.6061C>T (p.Arg2021Ter)Pathogenic
Ullrich congenital muscular dystrophy 2|Ullrich congenital muscular dystrophy 2;Bethlem myopathy 2
β˜…β˜…β˜†β˜†2025β†’ Residue 2021
NM_004370.6(COL12A1):c.6819del (p.Phe2273fs)Pathogenic
Ullrich congenital muscular dystrophy 2;Bethlem myopathy 2|not provided|Ullrich congenital muscular dystrophy 2
β˜…β˜…β˜†β˜†2025β†’ Residue 2273
NM_004370.6(COL12A1):c.4957+1G>ALikely pathogenic
not provided|Ullrich congenital muscular dystrophy 2;Bethlem myopathy 2
β˜…β˜…β˜†β˜†2024
NM_004370.6(COL12A1):c.7519+1G>ALikely pathogenic
not provided|Ullrich congenital muscular dystrophy 2;Bethlem myopathy 2
β˜…β˜…β˜†β˜†2024
NM_004370.6(COL12A1):c.4186C>T (p.Arg1396Ter)Pathogenic
Bethlem myopathy 2|Bethlem myopathy 2;Ullrich congenital muscular dystrophy 2
β˜…β˜…β˜†β˜†2024β†’ Residue 1396
NM_004370.6(COL12A1):c.3901C>T (p.Arg1301Ter)Pathogenic
Ullrich congenital muscular dystrophy 2|Ullrich congenital muscular dystrophy 2;Bethlem myopathy 2
β˜…β˜…β˜†β˜†2024β†’ Residue 1301
NM_004370.6(COL12A1):c.5794+2T>APathogenic
not provided|Bethlem myopathy 2;Ullrich congenital muscular dystrophy 2|Bethlem myopathy 2
β˜…β˜…β˜†β˜†2024
NM_004370.6(COL12A1):c.4240C>T (p.Arg1414Ter)Pathogenic
Ullrich congenital muscular dystrophy 2;Bethlem myopathy 2|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 1414
NM_004370.6(COL12A1):c.7001T>C (p.Ile2334Thr)Pathogenic
Bethlem myopathy 2|not provided|Ullrich congenital muscular dystrophy 2|Bethlem myopathy 2;Ullrich congenital muscular dystrophy 2
β˜…β˜…β˜†β˜†2023β†’ Residue 2334
NM_004370.6(COL12A1):c.8258G>A (p.Gly2753Asp)Likely pathogenic
not provided|Bethlem myopathy 2
β˜…β˜…β˜†β˜†2021β†’ Residue 2753
NM_004370.6(COL12A1):c.8453G>A (p.Gly2818Glu)Likely pathogenic
Inborn genetic diseases|Global developmental delay
β˜…β˜…β˜†β˜†2017β†’ Residue 2818
View on ClinVar β†—
Related Genes
LAMC1Protein interaction100%PLOD2Protein interaction98%PLOD3Protein interaction97%LAMA2Protein interaction97%THBS2Protein interaction89%COL22A1Protein interaction88%
Tissue Expression6 tissues
Ovary
100%
Heart
19%
Lung
16%
Liver
2%
Brain
1%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
COL12A1LAMC1PLOD2PLOD3LAMA2THBS2COL22A1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q99715
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.38Moderately Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.32 [0.27–0.38]
RankingsWhere COL12A1 stands among ~20K protein-coding genes
  • #6,059of 20,598
    Most Researched78
  • #584of 5,498
    Most Pathogenic Variants133 Β· top quartile
  • #1,770of 17,882
    Most Constrained (LOEUF)0.38 Β· top 10%
Genes detectedCOL12A1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis Β· 2022
1.00
2
Temporal profiling of the breast tumour microenvironment reveals collagen XII as a driver of metastasis.
PMID: 35933466
Nat Commun Β· 2022
0.90
3
Specifications and validation of the ACMG/AMP criteria for clinical interpretation of sequence variants in collagen genes associated with joint hypermobility.
PMID: 37079061
Hum Genet Β· 2023
0.80
4
Involvement of muscle satellite cell dysfunction in neuromuscular disorders: Expanding the portfolio of satellite cell-opathies.
PMID: 35302338
Eur J Transl Myol Β· 2022
0.70
5
Novel variant of COL12A1 gene causing neonatal hypotonia and respiratory failure.
PMID: 39985652
Neurol Sci Β· 2025
0.60