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GeneE
25 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
COL2A1
collagen type II alpha 1 chain
Chromosome 12 Β· 12q13.11
NCBI Gene: 1280Ensembl: ENSG00000139219.20HGNC: HGNC:2200UniProt: P02458
381PubMed Papers
37Diseases
2Drugs
1,101Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
RESEARCH IMPACT
Highly StudiedVariant-Rich
CLINICAL
FDA Approved TargetOMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
embryonic skeletal joint morphogenesisextracellular matrix structural constituent conferring tensile strengthMHC class II protein bindingcollagen type XI trimerspondyloepiphyseal dysplasia congenitaStickler syndrome type 1achondrogenesis type IIKniest dysplasia
✦AI Summary

COL2A1 encodes type II collagen, the predominant collagen in cartilaginous tissues essential for skeletal development and function 1. Type II collagen comprises three identical alpha-1(II) chains and is the major collagen synthesized by chondrocytes, localized to articular cartilage, vitreous humor, inner ear, and nucleus pulposus 1. The protein confers tensile strength to the extracellular matrix and is critical for cartilage's ability to resist compressive forces during linear growth 2. Mutations in COL2A1 cause type II collagenopathies, a group of 16 definite autosomal dominant or recessive disorders with over 405 documented mutations 1. Stickler syndrome type 1, the most common COL2A1-associated condition, results from loss-of-function mutations causing nonsense-mediated decay in >90% of cases 3. Patients present with characteristic vitreous anomalies, retinal detachment, cleft palate, hearing loss, and arthropathy 4. Additional COL2A1-associated diseases include achondrogenesis 2, Kniest dysplasia, and multiple epiphyseal dysplasia variants. SOX-9 and the retrotransposon-derived factor RTL3 co-regulate COL2A1 expression in chondrocytes 5. In osteoarthritis, COL2A1 expression is reduced; enhancing GFPT1 with glutamine restores COL2A1 expression and cartilage anabolic metabolism 6. COL2A1 somatic alterations occur in 19.3% of chondrosarcomas and 31.7% of enchondromas, implicating the gene in cartilaginous tumor development 7.

Sources cited
1
Type II collagen composition, tissue distribution, and overview of 16 COL2A1-associated disorders with >405 mutations
PMID: 27234559
2
Identification of human COL2A1 gene and its role in cartilage development
PMID: 3857598
3
Stickler syndrome type 1 caused by COL2A1 loss-of-function mutations with >90% causing nonsense-mediated decay; clinical phenotypes including vitreous anomalies and retinal detachment
PMID: 20179744
4
Stickler syndrome manifestations including congenital myopia, retinal detachment, cleft palate, hearing loss, and arthropathy in COL2A1 mutations
PMID: 39349161
5
SOX-9 and RTL3 co-regulate COL2A1 expression in chondrocytes during chondrogenesis
PMID: 33043724
6
COL2A1 expression reduction in osteoarthritis and restoration through GFPT1 upregulation
PMID: 39426230
7
COL2A1 somatic alterations in 19.3% of chondrosarcomas and 31.7% of enchondromas
PMID: 25024164
Disease Associationsβ“˜37
spondyloepiphyseal dysplasia congenitaOpen Targets
0.83Strong
Stickler syndrome type 1Open Targets
0.83Strong
achondrogenesis type IIOpen Targets
0.83Strong
Kniest dysplasiaOpen Targets
0.80Strong
platyspondylic dysplasia, Torrance typeOpen Targets
0.79Strong
spondyloepimetaphyseal dysplasia, Strudwick typeOpen Targets
0.78Strong
Achondrogenesis type 2Open Targets
0.78Strong
spondyloperipheral dysplasiaOpen Targets
0.78Strong
familial avascular necrosis of femoral headOpen Targets
0.76Strong
spondyloepiphyseal dysplasia, Stanescu typeOpen Targets
0.76Strong
spondyloepiphyseal dysplasia with metatarsal shorteningOpen Targets
0.75Strong
Legg-Calve-Perthes diseaseOpen Targets
0.74Strong
mild spondyloepiphyseal dysplasia due to COL2A1 mutation with early-onset osteoarthritisOpen Targets
0.74Strong
multiple epiphyseal dysplasia, Beighton typeOpen Targets
0.74Strong
Stickler syndrome, type I, nonsyndromic ocularOpen Targets
0.74Strong
vitreoretinopathy with phalangeal epiphyseal dysplasiaOpen Targets
0.73Strong
Legg-CalvΓ©-Perthes diseaseOpen Targets
0.71Strong
Spondyloperipheral dysplasia - short ulnaOpen Targets
0.68Moderate
Spondyloepimetaphyseal dysplasia congenita, Strudwick typeOpen Targets
0.66Moderate
Stickler syndromeOpen Targets
0.64Moderate
Achondrogenesis 2UniProt
Avascular necrosis of femoral head, primary, 1UniProt
Czech dysplasiaUniProt
Kniest dysplasiaUniProt
Legg-Calve-Perthes diseaseUniProt
Multiple epiphyseal dysplasia with myopia and conductive deafnessUniProt
Osteoarthritis with mild chondrodysplasiaUniProt
Platyspondylic lethal skeletal dysplasia Torrance typeUniProt
Rhegmatogenous retinal detachment autosomal dominantUniProt
Spondyloepimetaphyseal dysplasia, Strudwick typeUniProt
Spondyloepiphyseal dysplasia congenital typeUniProt
Spondyloepiphyseal dysplasia, Stanescu typeUniProt
Spondylometaphyseal dysplasia, Algerian typeUniProt
Spondyloperipheral dysplasiaUniProt
Stickler syndrome 1UniProt
Stickler syndrome 1 non-syndromic ocularUniProt
Vitreoretinopathy with phalangeal epiphyseal dysplasiaUniProt
Pathogenic Variants1,101
NM_001844.5(COL2A1):c.1177G>A (p.Gly393Ser)Pathogenic
Stickler syndrome type 1|not provided|Spondyloepiphyseal dysplasia congenita
β˜…β˜…β˜†β˜†2026β†’ Residue 393
NM_001844.5(COL2A1):c.1888G>A (p.Gly630Ser)Likely pathogenic
not provided|Legg-Calve-Perthes disease
β˜…β˜…β˜†β˜†2026β†’ Residue 630
NM_001844.5(COL2A1):c.2659C>T (p.Arg887Ter)Pathogenic
not provided|Stickler syndrome type 1|COL2A1-related disorder|Stickler syndrome, type I, nonsyndromic ocular|Stickler syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 887
NM_001844.5(COL2A1):c.1931del (p.Pro644fs)Pathogenic
not provided|Stickler syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 644
NM_001844.5(COL2A1):c.1636G>A (p.Gly546Ser)Pathogenic
not provided|Inborn genetic diseases|Achondrogenesis type II
β˜…β˜…β˜†β˜†2026β†’ Residue 546
NM_001844.5(COL2A1):c.2813del (p.Pro938fs)Pathogenic
not provided|COL2A1-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 938
NM_001844.5(COL2A1):c.1693C>T (p.Arg565Cys)Pathogenic
Stickler syndrome type 1|not provided|Retinal dystrophy|Achondrogenesis type II|Stickler syndrome, type I, nonsyndromic ocular|COL2A1-related disorder|Stickler syndrome|15 conditions
β˜…β˜…β˜†β˜†2026β†’ Residue 565
NM_001844.5(COL2A1):c.1527+135G>APathogenic
Stargardt disease|not provided|Stickler syndrome type 1
β˜…β˜…β˜†β˜†2026
NM_001844.5(COL2A1):c.2014G>T (p.Gly672Cys)Pathogenic
not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 672
NM_001844.5(COL2A1):c.3490G>A (p.Gly1164Ser)Pathogenic
not provided|Stickler syndrome type 1|COL2A1-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 1164
NM_001844.5(COL2A1):c.258C>A (p.Cys86Ter)Pathogenic
not provided|14 conditions|15 conditions
β˜…β˜…β˜†β˜†2026β†’ Residue 86
NM_001844.5(COL2A1):c.3280C>T (p.Gln1094Ter)Pathogenic
Stickler syndrome type 1|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 1094
NM_001844.5(COL2A1):c.2833G>A (p.Gly945Ser)Pathogenic
not provided|Spondylometaphyseal dysplasia - Sutcliffe type|not specified|Type 2 collagenopathy|8 conditions
β˜…β˜…β˜†β˜†2026β†’ Residue 945
NM_001844.5(COL2A1):c.3138del (p.Gly1047fs)Pathogenic
Stickler syndrome type 1|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 1047
NM_001844.5(COL2A1):c.3574C>T (p.Arg1192Ter)Pathogenic
not provided|Spondyloepiphyseal dysplasia congenita|COL2A1-related disorder|Stickler syndrome type 1
β˜…β˜…β˜†β˜†2026β†’ Residue 1192
NM_001844.5(COL2A1):c.823C>T (p.Arg275Cys)Pathogenic
Spondyloepiphyseal dysplasia with metatarsal shortening|Stickler syndrome type 1|not provided|Achondrogenesis type II|Acetabular dysplasia
β˜…β˜…β˜†β˜†2026β†’ Residue 275
NM_001844.5(COL2A1):c.905C>T (p.Ala302Val)Pathogenic
not provided|Spondyloepimetaphyseal dysplasia, Strudwick type|Spondyloepiphyseal dysplasia congenita|Abnormality of the skeletal system|16 conditions|Type 2 collagenopathy
β˜…β˜…β˜†β˜†2026β†’ Residue 302
NM_001844.5(COL2A1):c.908G>A (p.Gly303Asp)Pathogenic
Kniest dysplasia|not provided|Stickler syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 303
NM_001844.5(COL2A1):c.3334C>T (p.Gln1112Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 1112
NM_001844.5(COL2A1):c.1331_1340del (p.Gly444fs)Pathogenic
not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 444
View on ClinVar β†—
Drug Targets2
COLLAGENASE CLOSTRIDIUM HISTOLYTICUMApproved
Collagen hydrolytic enzyme
ulcer disease
OCRIPLASMINApproved
Laminin hydrolytic enzyme
Related Genes
HLA-DRAProtein interaction100%ITGA3Protein interaction98%ITGA5Protein interaction95%SOX6Protein interaction95%COL8A2Protein interaction95%BMP2Protein interaction94%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
82%
Brain
78%
Liver
2%
Lung
2%
Heart
0%
Gene Interaction Network
Click a node to explore
COL2A1HLA-DRAITGA3ITGA5SOX6COL8A2BMP2
PROTEIN STRUCTURE
Preparing viewer…
PDB6HG7 Β· 1.00 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.18Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.13 [0.10–0.18]
RankingsWhere COL2A1 stands among ~20K protein-coding genes
  • #790of 20,598
    Most Researched381 Β· top 5%
  • #521of 1,025
    FDA-Approved Drug Targets2
  • #27of 5,498
    Most Pathogenic Variants1,101 Β· top 1%
  • #352of 17,882
    Most Constrained (LOEUF)0.18 Β· top 5%
Genes detectedCOL2A1
Sources retrieved25 papers
Response timeβ€”
πŸ“„ Sources
25β–Ό
1
Stickler syndrome caused by COL2A1 mutations: genotype-phenotype correlation in a series of 100 patients.
PMID: 20179744
Eur J Hum Genet Β· 2010
1.00
2
Mutation Update for COL2A1 Gene Variants Associated with Type II Collagenopathies.
PMID: 26443184
Hum Mutat Β· 2016
0.96
3
Identification and characterization of the human type II collagen gene (COL2A1).
PMID: 3857598
Proc Natl Acad Sci U S A Β· 1985
0.90
4
Unique mutation portraits and frequent COL2A1 gene alteration in chondrosarcoma.
PMID: 25024164
Genome Res Β· 2014
0.80
5
Molecular genetics of the COL2A1-related disorders.
PMID: 27234559
Mutat Res Rev Mutat Res Β· 2016
0.70