HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CSMD2
CUB and Sushi multiple domains 2
Chromosome 1 · 1p35.1
NCBI Gene: 114784Ensembl: ENSG00000121904.19HGNC: HGNC:19290UniProt: Q7Z408
26PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Swiss-Prot Reviewed
postsynaptic density assemblymaintenance of postsynaptic density structurepostsynaptic density membraneglutamatergic synapseneurodegenerative diseaseplacenta praeviaobesitygastrointestinal disease
✦AI Summary

CSMD2 (CUB and Sushi Multiple Domains 2) is a synaptic transmembrane protein located on chromosome 1.1-34.3 that plays critical roles in neuronal development and synaptic function. The gene encodes a protein with complement control-related domains and is predominantly expressed during early brain development, with highest expression in inhibitory neurons 1. Mechanism: CSMD2 participates in synaptogenesis, dendritic growth, and synaptic maturation 1. The protein functions in complement regulation, influencing synaptic pruning and synaptic plasticity, processes fundamental to cognitive function and neuronal circuit refinement 23. Disease Relevance: Genetic variants in CSMD2 are associated with multiple neuropsychiatric and developmental conditions. The gene shows strong association with focal epilepsy and focal cortical dysplasia (FCD), with CSMD2 variants identified in six focal epilepsy cases, predominantly as missense variants with low allele frequencies 1. Rare variants have been identified in autism spectrum disorder patients, including both homozygous and de novo mutations 4. CSMD2 variants also associate with schizophrenia through genome-wide association studies and with severe diabetic retinopathy in type 1 diabetes 25. Additionally, CSMD2 association with Kawasaki disease treatment response suggests broader immunological functions 6. Clinical Significance: The development-dependent expression pattern and neuron-specificity of CSMD2 explain its particular relevance to focal epilepsy phenotypes, offering insights into neurodevelopmental disease mechanisms and potential therapeutic targets.

Sources cited
1
CSMD2 variants associated with focal epilepsy/FCD; gene expressed predominantly at early development stages in inhibitory neurons
PMID: 40632521
2
Biallelic and de novo CSMD2 variants identified in autism spectrum disorder patients
PMID: 38649688
3
CSMD2 polymorphisms associated with schizophrenia through genome-wide association; gene involved in complement regulation
PMID: 21439553
4
CSMD2 associated with severe diabetic retinopathy in type 1 diabetes through sliding window analysis
PMID: 41129127
5
CSMD1/CSMD2 variants associated with cognitive functions, particularly episodic memory
PMID: 27890662
6
CSMD2 variants associated with Kawasaki disease IVIG treatment response
PMID: 38259468
7
CSMD genes encode transmembrane proteins with CUB and sushi multiple domains, expressed in brain
PMID: 12943675
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.34Weak
placenta praeviaOpen Targets
0.34Weak
obesityOpen Targets
0.31Weak
gastrointestinal diseaseOpen Targets
0.30Weak
acute cystitisOpen Targets
0.29Weak
cervical carcinomaOpen Targets
0.26Weak
cholelithiasisOpen Targets
0.26Weak
spontaneous abortionOpen Targets
0.26Weak
Abnormal nasolacrimal system morphologyOpen Targets
0.25Weak
HepatomegalyOpen Targets
0.24Weak
schizophreniaOpen Targets
0.24Weak
AlkalosisOpen Targets
0.24Weak
hyperpituitarismOpen Targets
0.24Weak
spermatoceleOpen Targets
0.22Weak
Conductive hearing impairmentOpen Targets
0.22Weak
injuryOpen Targets
0.22Weak
COVID-19Open Targets
0.21Weak
osteitis deformansOpen Targets
0.19Weak
strictureOpen Targets
0.18Weak
autism spectrum disorderOpen Targets
0.11Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TANC2Shared pathway25%C1QL3Shared pathway20%CSMD3Co-mentioned in literature20%C1QL2Shared pathway17%PPFIA2Shared pathway14%NPTX1Shared pathway10%
Tissue Expression6 tissues
Brain
100%
Heart
14%
Lung
4%
Ovary
3%
Liver
3%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
CSMD2TANC2C1QL3CSMD3C1QL2PPFIA2NPTX1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q7Z408
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.36Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.31 [0.27–0.36]
RankingsWhere CSMD2 stands among ~20K protein-coding genes
  • #12,767of 20,598
    Most Researched26
  • #1,653of 17,882
    Most Constrained (LOEUF)0.36 · top 10%
Genes detectedCSMD2
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Variants in CSMD2 and CSMD3, genes involved in synaptogenesis, are associated with epilepsies.
PMID: 40632521
Epilepsia · 2025
1.00
2
Biallelic variants identified in 36 Pakistani families and trios with autism spectrum disorder.
PMID: 38649688
Sci Rep · 2024
0.90
3
The complement control-related genes CSMD1 and CSMD2 associate to schizophrenia.
PMID: 21439553
Biol Psychiatry · 2011
0.80
4
Exome and Genome Sequencing Reveals Novel Variants for Severe Diabetic Retinopathy in Type 1 Diabetes.
PMID: 41129127
Invest Ophthalmol Vis Sci · 2025
0.70
5
A novel giant gene CSMD3 encoding a protein with CUB and sushi multiple domains: a candidate gene for benign adult familial myoclonic epilepsy on human chromosome 8q23.3-q24.1.
PMID: 12943675
Biochem Biophys Res Commun · 2003
0.60