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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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TANC2
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
Chromosome 17 Β· 17q23.2-q23.3
NCBI Gene: 26115Ensembl: ENSG00000170921.16HGNC: HGNC:30212UniProt: A0A8I5KXR5
47PubMed Papers
21Diseases
0Drugs
54Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingdendritic spineregulation of dendritic spine developmentregulation of dendritic spine morphogenesisintellectual developmental disorder with autistic features and language delay, with or without seizuresgenetic disorderIntellectual disabilityNeurodevelopmental disorder
✦AI Summary

TANC2 is a postsynaptic scaffolding protein essential for brain development and synaptic function. It localizes to dendritic spines where it serves as an immobile structural component of the postsynaptic density, recruiting dense core vesicles and interacting with multiple synaptic proteins 1. Mechanistically, TANC2 directly inhibits mTORC1/2 signaling in developing neurons, a function distinct from other mTOR inhibitors and critical for normal neurodevelopment 2. Loss of TANC2 disrupts the balance between excitatory and inhibitory neurons, leading to excitatory/inhibitory imbalance 3. Pathogenic TANC2 variants cause a spectrum of neurodevelopmental disorders correlating with mutation severity. Null variants typically cause developmental and epileptic encephalopathy (DEE) with severe phenotypes, while missense variants present with milder manifestations ranging from isolated epilepsy to autism with intellectual disability 4. Common clinical features include autism spectrum disorder (70.6%), intellectual disability (94.1%), language delay (88.2%), epilepsy, and motor impairment 5. TANC2-disrupting mutations also associate with psychiatric dysfunction and behavioral problems in adults 1. Beyond the nervous system, TANC2 has pleiotropic functions affecting growth and hepatic metabolism through Hippo pathway interactions 6. These findings establish TANC2 as a critical regulator of both neural development and neuropsychiatric phenotypes.

Sources cited
1
De novo TANC2 variants cause epilepsy and DEE with genotype-phenotype correlation; null variants cause severe phenotypes while missense variants cause milder disease
PMID: 40110879
2
TANC2 is a postsynaptic density protein mutated in patients with autism, intellectual disability, language/motor delay, epilepsy, and psychiatric dysfunction in adults
PMID: 31616000
3
TANC2 variants cause NDDs with high frequency of autism (70.6%), intellectual disability (94.1%), and language/motor delay
PMID: 39344613
4
TANC2 directly inhibits mTORC1/2 signaling in developing neurons and neural progenitor cells, essential for normal neurodevelopment
PMID: 33976205
5
TANC2 knockout increases glutamatergic neurons while sparing GABAergic neurons, causing excitatory/inhibitory imbalance and autism-like behaviors in zebrafish
PMID: 36534563
6
TANC2 has pleiotropic effects affecting growth, liver function, and psychiatric endophenotypes through interactions with Hippo pathway proteins
PMID: 34964047
Disease Associationsβ“˜21
intellectual developmental disorder with autistic features and language delay, with or without seizuresOpen Targets
0.78Strong
genetic disorderOpen Targets
0.51Moderate
Intellectual disabilityOpen Targets
0.46Moderate
Neurodevelopmental disorderOpen Targets
0.39Weak
complex neurodevelopmental disorderOpen Targets
0.37Weak
developmental disabilityOpen Targets
0.37Weak
autism spectrum disorderOpen Targets
0.37Weak
intelligenceOpen Targets
0.34Weak
insomniaOpen Targets
0.34Weak
cleft lipOpen Targets
0.33Weak
epilepsyOpen Targets
0.33Weak
cardiac transplantOpen Targets
0.31Weak
orofacial cleftOpen Targets
0.30Weak
ovarian neoplasmOpen Targets
0.28Weak
heart diseaseOpen Targets
0.28Weak
cervical carcinomaOpen Targets
0.27Weak
open-angle glaucomaOpen Targets
0.25Weak
cleft palateOpen Targets
0.25Weak
glaucomaOpen Targets
0.20Weak
actinic keratosisOpen Targets
0.19Weak
Intellectual developmental disorder with autistic features and language delay, with or without seizuresUniProt
Pathogenic Variants54
NM_001394998.1(TANC2):c.1123_1124del (p.Ser375fs)Likely pathogenic
Intellectual developmental disorder with autistic features and language delay, with or without seizures|Intellectual disability
β˜…β˜…β˜†β˜†2024β†’ Residue 375
NM_001394998.1(TANC2):c.1441+5G>ALikely pathogenic
Intellectual developmental disorder with autistic features and language delay, with or without seizures
β˜…β˜†β˜†β˜†2026
NM_001394998.1(TANC2):c.3418C>T (p.Arg1140Ter)Pathogenic
INTELLECTUAL DEVELOPMENTAL DISORDER WITH AUTISTIC FEATURES AND LANGUAGE DELAY WITHOUT SEIZURES|Autism spectrum disorder|Intellectual developmental disorder with autistic features and language delay, with or without seizures
β˜…β˜†β˜†β˜†2025β†’ Residue 1140
NM_001394998.1(TANC2):c.2856C>A (p.Tyr952Ter)Pathogenic
Intellectual developmental disorder with autistic features and language delay, with or without seizures
β˜…β˜†β˜†β˜†2025β†’ Residue 952
NM_001394998.1(TANC2):c.2653G>T (p.Glu885Ter)Pathogenic
Intellectual developmental disorder with autistic features and language delay, with or without seizures
β˜…β˜†β˜†β˜†2025β†’ Residue 885
NM_001394998.1(TANC2):c.213T>C (p.Gly71=)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 71
NM_001394998.1(TANC2):c.5275C>T (p.Gln1759Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 1759
NM_001394998.1(TANC2):c.2662_2665dup (p.His889fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 889
NM_001394998.1(TANC2):c.1108C>T (p.Arg370Ter)Likely pathogenic
Intellectual developmental disorder with autistic features and language delay, with or without seizures
β˜…β˜†β˜†β˜†2025β†’ Residue 370
NM_001394998.1(TANC2):c.4687del (p.Arg1563fs)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2025β†’ Residue 1563
NM_001394998.1(TANC2):c.2419G>T (p.Glu807Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 807
NM_001394998.1(TANC2):c.94C>T (p.Arg32Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 32
NM_001394998.1(TANC2):c.3289C>T (p.Arg1097Ter)Likely pathogenic
Intellectual developmental disorder with autistic features and language delay, with or without seizures|Thyroid cancer, nonmedullary, 1|Hepatocellular carcinoma
β˜…β˜†β˜†β˜†2025β†’ Residue 1097
NM_001394998.1(TANC2):c.2205dup (p.Asp736Ter)Likely pathogenic
Intellectual developmental disorder with autistic features and language delay, with or without seizures
β˜…β˜†β˜†β˜†2025β†’ Residue 736
NM_001394998.1(TANC2):c.5368C>T (p.Arg1790Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 1790
NM_001394998.1(TANC2):c.139+2T>ALikely pathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_001394998.1(TANC2):c.2582+2T>GLikely pathogenic
Intellectual developmental disorder with autistic features and language delay, with or without seizures
β˜…β˜†β˜†β˜†2024
NM_001394998.1(TANC2):c.4146_4147del (p.Arg1383fs)Likely pathogenic
Intellectual developmental disorder with autistic features and language delay, with or without seizures
β˜…β˜†β˜†β˜†2024β†’ Residue 1383
NM_001394998.1(TANC2):c.1938G>A (p.Trp646Ter)Pathogenic
Intellectual developmental disorder with autistic features and language delay, with or without seizures
β˜…β˜†β˜†β˜†2024β†’ Residue 646
NM_001394998.1(TANC2):c.2949del (p.Asn984fs)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2024β†’ Residue 984
View on ClinVar β†—
Related Genes
PPFIA2Shared pathway50%LZTS3Shared pathway33%KIF1AShared pathway25%CSMD2Shared pathway25%ARHGAP33Shared pathway20%ARHGAP32Shared pathway17%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
87%
Lung
50%
Heart
24%
Ovary
20%
Liver
9%
Gene Interaction Network
Click a node to explore
TANC2PPFIA2LZTS3KIF1ACSMD2ARHGAP33ARHGAP32
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q9HCD6
View on AlphaFold β†—
RankingsWhere TANC2 stands among ~20K protein-coding genes
  • #9,281of 20,598
    Most Researched47
  • #1,267of 5,498
    Most Pathogenic Variants54 Β· top quartile
Genes detectedTANC2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
De novo TANC2 variants caused developmental and epileptic encephalopathy and epilepsy.
PMID: 40110879
Epilepsia Β· 2025
1.00
2
Disruptive mutations in TANC2 define a neurodevelopmental syndrome associated with psychiatric disorders.
PMID: 31616000
Nat Commun Β· 2019
0.90
3
[Clinical and genetic analysis of two children with TANC2 gene variants and a literature review].
PMID: 39344613
Zhonghua Yi Xue Yi Chuan Xue Za Zhi Β· 2024
0.80
4
Tanc2-mediated mTOR inhibition balances mTORC1/2 signaling in the developing mouse brain and human neurons.
PMID: 33976205
Nat Commun Β· 2021
0.70
5
Knockout of tanc2 causes autism-like behavior and sleep disturbance in zebrafish.
PMID: 36534563
Autism Res Β· 2023
0.60