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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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GALC
galactosylceramidase
Chromosome 14 Β· 14q31.3
NCBI Gene: 2581Ensembl: ENSG00000054983.18HGNC: HGNC:4115UniProt: A0A0A0MQV0
88PubMed Papers
21Diseases
0Drugs
369Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
galactosylceramidase activitygalactosylceramide catabolic processlysosomeglycosphingolipid catabolic processKrabbe diseasegenetic disorderinflammatory bowel diseaseCrohn's disease
✦AI Summary

GALC encodes galactosylceramidase, a lysosomal enzyme that hydrolyzes galactose ester bonds of glycolipids, particularly galactosylceramide and galactosylsphingosine 12. This enzyme has very low activity under normal conditions and is responsible for the lysosomal catabolism of galactosylceramide, a major lipid component of myelin, kidney, and epithelial cells of the small intestine and colon 12. GALC deficiency causes Krabbe disease, a rare autosomal recessive leukodystrophy characterized by white matter degeneration 3. The disease manifests as infantile symptoms including irritability, progressive stiffness, developmental delay, and often death, with hematopoietic stem cell transplantation being the only potential treatment 3. Newborn screening programs measure GALC enzyme activity to identify affected individuals, with positive predictive values around 1.4% and an incidence of approximately 1 in 394,000 for infantile forms 3. Recent research suggests that common GALC variants may also influence Parkinson's disease risk through altered galactosylceramidase activity levels 4. The enzyme plays a crucial role in glycosphingolipid metabolism and lysosomal function, with mutations causing severe neurological pathology through disrupted myelin maintenance 5.

Sources cited
1
GALC hydrolyzes galactose ester bonds of galactosylceramide and galactosylsphingosine
PMID: 8281145
2
GALC is responsible for lysosomal catabolism of galactosylceramide in myelin, kidney and intestinal cells
PMID: 8399327
3
GALC deficiency causes Krabbe disease with infantile symptoms and 1 in 394,000 incidence
PMID: 26795590
4
GALC variants affect galactosylceramidase activity and may influence Parkinson's disease risk
PMID: 36370000
5
GALC mutations cause leukodystrophies with white matter pathology and myelin loss
PMID: 40500501
Disease Associationsβ“˜21
Krabbe diseaseOpen Targets
0.86Strong
genetic disorderOpen Targets
0.51Moderate
inflammatory bowel diseaseOpen Targets
0.44Moderate
Crohn's diseaseOpen Targets
0.43Moderate
spastic ataxiaOpen Targets
0.41Moderate
adult Krabbe diseaseOpen Targets
0.38Weak
infantile Krabbe diseaseOpen Targets
0.37Weak
late-infantile/juvenile Krabbe diseaseOpen Targets
0.37Weak
Parkinson diseaseOpen Targets
0.36Weak
ulcerative colitisOpen Targets
0.36Weak
Fabry diseaseOpen Targets
0.34Weak
Abnormality of the nervous systemOpen Targets
0.34Weak
Angiokeratoma corporis diffusumOpen Targets
0.34Weak
multiple sclerosisOpen Targets
0.34Weak
leukodystrophyOpen Targets
0.33Weak
Global developmental delayOpen Targets
0.33Weak
status epilepticusOpen Targets
0.33Weak
NystagmusOpen Targets
0.33Weak
SeizureOpen Targets
0.33Weak
amblyopiaOpen Targets
0.33Weak
Krabbe diseaseUniProt
Pathogenic Variants369
NM_000153.4(GALC):c.1901T>C (p.Leu634Ser)Pathogenic
Galactosylceramide beta-galactosidase deficiency|not provided|Fetal anomalies with a likely genetic cause
β˜…β˜…β˜†β˜†2026β†’ Residue 634
NM_000153.4(GALC):c.236G>A (p.Arg79His)Pathogenic
Inborn genetic diseases|Galactosylceramide beta-galactosidase deficiency|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 79
NM_000153.4(GALC):c.1592G>A (p.Arg531His)Pathogenic
not provided|Galactosylceramide beta-galactosidase deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 531
NM_000153.4(GALC):c.264+1G>ALikely pathogenic
Galactosylceramide beta-galactosidase deficiency|not provided
β˜…β˜…β˜†β˜†2026
NM_000153.4(GALC):c.941A>G (p.Tyr314Cys)Pathogenic
Galactosylceramide beta-galactosidase deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 314
NM_000153.4(GALC):c.1586C>T (p.Thr529Met)Pathogenic
Galactosylceramide beta-galactosidase deficiency|not provided|GALC-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 529
NM_000153.4(GALC):c.195+1G>APathogenic
not provided|Galactosylceramide beta-galactosidase deficiency
β˜…β˜…β˜†β˜†2026
NM_000153.4(GALC):c.857G>A (p.Gly286Asp)Pathogenic
Galactosylceramide beta-galactosidase deficiency|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 286
NM_000153.4(GALC):c.1898C>T (p.Thr633Met)Pathogenic
Galactosylceramide beta-galactosidase deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 633
NM_000153.4(GALC):c.430del (p.Ile144fs)Pathogenic
not provided|Galactosylceramide beta-galactosidase deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 144
NM_000153.4(GALC):c.1153G>T (p.Glu385Ter)Pathogenic
Galactosylceramide beta-galactosidase deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 385
NM_000153.4(GALC):c.1541T>C (p.Phe514Ser)Pathogenic
Galactosylceramide beta-galactosidase deficiency|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 514
NM_000153.4(GALC):c.1161+2T>ALikely pathogenic
Galactosylceramide beta-galactosidase deficiency
β˜…β˜…β˜†β˜†2026
NM_000153.4(GALC):c.129C>G (p.Tyr43Ter)Pathogenic
Galactosylceramide beta-galactosidase deficiency|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 43
NM_000153.4(GALC):c.205C>T (p.Arg69Ter)Pathogenic
Galactosylceramide beta-galactosidase deficiency|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 69
NM_000153.4(GALC):c.349A>T (p.Met117Leu)Pathogenic
Galactosylceramide beta-galactosidase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 117
NM_000153.4(GALC):c.349A>C (p.Met117Leu)Pathogenic
Galactosylceramide beta-galactosidase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 117
NM_000153.4(GALC):c.1700A>C (p.Tyr567Ser)Pathogenic
Galactosylceramide beta-galactosidase deficiency|not provided|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 567
NM_000153.4(GALC):c.947_950dup (p.Pro318fs)Pathogenic
Galactosylceramide beta-galactosidase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 318
NM_000153.4(GALC):c.884A>C (p.Asn295Thr)Likely pathogenic
Galactosylceramide beta-galactosidase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 295
View on ClinVar β†—
Related Genes
ARSAProtein interaction99%ASAH1Protein interaction99%UGCGProtein interaction98%ASAH2Protein interaction98%ACER2Protein interaction97%ACER1Protein interaction97%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
94%
Heart
62%
Lung
57%
Ovary
50%
Liver
24%
Gene Interaction Network
Click a node to explore
GALCARSAASAH1UGCGASAH2ACER2ACER1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt P54803
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.02LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.81 [0.65–1.02]
RankingsWhere GALC stands among ~20K protein-coding genes
  • #5,410of 20,598
    Most Researched88
  • #155of 5,498
    Most Pathogenic Variants369 Β· top 5%
  • #9,984of 17,882
    Most Constrained (LOEUF)1.02
Genes detectedGALC
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Newborn screening for Krabbe disease in New York State: the first eight years' experience.
PMID: 26795590
Genet Med Β· 2016
1.00
2
Platelet autophagic machinery involved in thrombosis through a novel linkage of AMPK-MTOR to sphingolipid metabolism.
PMID: 33749503
Autophagy Β· 2021
0.90
3
Expression of individual mutations and haplotypes in the galactocerebrosidase gene identified by the newborn screening program in New York State and in confirmed cases of Krabbe's disease.
PMID: 27638593
J Neurosci Res Β· 2016
0.80
4
GALC variants affect galactosylceramidase enzymatic activity and risk of Parkinson's disease.
PMID: 36370000
Brain Β· 2023
0.70
5
STING mediates lysosomal quality control and recovery through its proton channel function and TFEB activation in lysosomal storage disorders.
PMID: 40185098
Mol Cell Β· 2025
0.60