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GeneE
27 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
GLI2
GLI family zinc finger 2
Chromosome 2 Β· 2q14.2
NCBI Gene: 2736Ensembl: ENSG00000074047.22HGNC: HGNC:4318UniProt: A0A7I2PJA1
227PubMed Papers
22Diseases
0Drugs
91Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
RESEARCH IMPACT
TrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
sequence-specific double-stranded DNA bindingpromoter-specific chromatin bindingnegative regulation of transcription by RNA polymerase IIDNA-binding transcription activator activity, RNA polymerase II-specificholoprosencephaly 9postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndromegenetic disorderholoprosencephaly
✦AI Summary

GLI2 is a transcriptional regulator of the Hedgehog signaling pathway that functions as both an activator and repressor of gene expression through sequence-specific DNA binding. Acting downstream of Smoothened signaling, GLI2 is phosphorylated by the ciliary kinase DYRK2 at conserved serine residues, which promotes its dissociation from the suppressor protein SUFU and nuclear translocation 1. GLI2 plays critical roles in developmental processes including skeletal morphogenesis, limb development, and pituitary formation 12. Pathogenic GLI2 variants cause Culler-Jones syndrome, a rare autosomal dominant disorder characterized by hypopituitarism (present in 91% of patients), pituitary stalk interruption, and extrapituitary manifestations including polydactyly (27%), neurocognitive disorders (38%), and cardiac/renal abnormalities 23. GLI2 variants represent the most frequent genetic cause of syndromic congenital hypopituitarism (68% of cases), though disease expression shows significant phenotypic heterogeneity even within families 23. In cancer, aberrant GLI2 activation promotes tumorigenesis through multiple mechanisms. GLI2 cooperates with oncogenic KRAS to upregulate growth-promoting genes including Ccnd1, N-Myc, and Bcl2 in pancreatic cancer 4. GLI2 drives chemoresistance in gastric cancer via GLI2/DEC1/ZEB1-mediated epithelial-mesenchymal transition 5, and facilitates immunotherapy resistance by upregulating WNT and prostaglandin signaling to create an immunosuppressive tumor microenvironment 6. TGF-Ξ²1/SMAD3-driven GLI2 activation in hepatocellular carcinoma promotes stemness, metastasis, and chemo-resistance, with high GLI2 expression correlating with poor disease-free survival 7.

Sources cited
1
Acting downstream of Smoothened signaling, GLI2 is phosphorylated by the ciliary kinase DYRK2 at conserved serine residues, which promotes its dissociation from the suppressor protein SUFU and nuclear translocation .
PMID: 38968120
2
GLI2 cooperates with oncogenic KRAS to upregulate growth-promoting genes including Ccnd1, N-Myc, and Bcl2 in pancreatic cancer .
PMID: 38896052
3
GLI2 drives chemoresistance in gastric cancer via GLI2/DEC1/ZEB1-mediated epithelial-mesenchymal transition , and facilitates immunotherapy resistance by upregulating WNT and prostaglandin signaling to create an immunosuppressive tumor microenvironment .
PMID: 40133270
4
GLI2 drives chemoresistance in gastric cancer via GLI2/DEC1/ZEB1-mediated epithelial-mesenchymal transition , and facilitates immunotherapy resistance by upregulating WNT and prostaglandin signaling to create an immunosuppressive tumor microenvironment .
PMID: 39970333
5
TGF-Ξ²1/SMAD3-driven GLI2 activation in hepatocellular carcinoma promotes stemness, metastasis, and chemo-resistance, with high GLI2 expression correlating with poor disease-free survival .
PMID: 38453045
Disease Associationsβ“˜22
holoprosencephaly 9Open Targets
0.80Strong
postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndromeOpen Targets
0.79Strong
genetic disorderOpen Targets
0.53Moderate
holoprosencephalyOpen Targets
0.49Moderate
microform holoprosencephalyOpen Targets
0.47Moderate
combined pituitary hormone deficiencies, genetic formOpen Targets
0.44Moderate
Combined pituitary hormone deficiencies, genetic formsOpen Targets
0.44Moderate
diabetes mellitusOpen Targets
0.43Moderate
androgenetic alopeciaOpen Targets
0.42Moderate
polydactylyOpen Targets
0.37Weak
alobar holoprosencephalyOpen Targets
0.37Weak
lobar holoprosencephalyOpen Targets
0.37Weak
midline interhemispheric variant of holoprosencephalyOpen Targets
0.37Weak
semilobar holoprosencephalyOpen Targets
0.37Weak
septopreoptic holoprosencephalyOpen Targets
0.37Weak
Cerebellar cystOpen Targets
0.34Weak
developmental disorder of mental healthOpen Targets
0.34Weak
intellectual disability-microcephaly-strabismus-behavioral abnormalities syndromeOpen Targets
0.34Weak
type 2 diabetes mellitusOpen Targets
0.34Weak
paralytic strabismusOpen Targets
0.31Weak
Culler-Jones syndromeUniProt
Holoprosencephaly 9UniProt
Pathogenic Variants91
NM_001374353.1(GLI2):c.192dup (p.Asp65Ter)Pathogenic
Postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome;Holoprosencephaly 9|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 65
NM_001374353.1(GLI2):c.162_163del (p.Leu55fs)Pathogenic
not provided|Postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome;Holoprosencephaly 9|Postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 55
NM_001374353.1(GLI2):c.790C>T (p.Arg264Ter)Pathogenic
Microform holoprosencephaly|Postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome;Holoprosencephaly 9|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 264
NM_001374353.1(GLI2):c.1370G>A (p.Trp457Ter)Pathogenic
not provided|Holoprosencephaly 9;Postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome|GLI2-related disorder|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 457
NM_001374353.1(GLI2):c.1905+1G>APathogenic
Holoprosencephaly 9;Postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome|Holoprosencephaly 9
β˜…β˜…β˜†β˜†2024
NM_001374353.1(GLI2):c.1183-45delLikely pathogenic
Holoprosencephaly 9|Postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome
β˜…β˜…β˜†β˜†2023
NM_001374353.1(GLI2):c.3625C>T (p.Arg1209Ter)Pathogenic
Postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome|Holoprosencephaly 9
β˜…β˜…β˜†β˜†2022β†’ Residue 1209
NM_001374353.1(GLI2):c.904C>T (p.Gln302Ter)Pathogenic
Holoprosencephaly 9;Postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome
β˜…β˜†β˜†β˜†2026β†’ Residue 302
NM_001374353.1(GLI2):c.86del (p.Gly29fs)Likely pathogenic
Postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 29
NM_001374353.1(GLI2):c.463C>T (p.Gln155Ter)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2025β†’ Residue 155
NM_001374353.1(GLI2):c.226G>T (p.Glu76Ter)Likely pathogenic
Postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome;Holoprosencephaly 9
β˜…β˜†β˜†β˜†2025β†’ Residue 76
NM_001374353.1(GLI2):c.3359_3366del (p.Leu1120fs)Pathogenic
GLI2-related disorder
β˜…β˜†β˜†β˜†2025β†’ Residue 1120
NM_001374353.1(GLI2):c.1905+3A>CLikely pathogenic
Postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome
β˜…β˜†β˜†β˜†2025
NM_001374353.1(GLI2):c.3493C>T (p.Gln1165Ter)Likely pathogenic
Postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 1165
NM_001374353.1(GLI2):c.1060-2A>CLikely pathogenic
GLI2-related disorder
β˜…β˜†β˜†β˜†2025
NM_001374353.1(GLI2):c.1600G>A (p.Ala534Thr)Likely pathogenic
Craniosynostosis syndrome|not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 534
NM_001374353.1(GLI2):c.2515del (p.Asp839fs)Likely pathogenic
Combined pituitary hormone deficiencies, genetic form
β˜…β˜†β˜†β˜†2025β†’ Residue 839
NM_001374353.1(GLI2):c.104dup (p.Leu35fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 35
NM_001374353.1(GLI2):c.1674C>G (p.Tyr558Ter)Pathogenic
Holoprosencephaly 9
β˜…β˜†β˜†β˜†2025β†’ Residue 558
NM_001374353.1(GLI2):c.3514C>T (p.Gln1172Ter)Likely pathogenic
GLI2-related disorder
β˜…β˜†β˜†β˜†2024β†’ Residue 1172
View on ClinVar β†—
Related Genes
SUFUProtein interaction100%THOC1Protein interaction100%THOC3Protein interaction100%GSK3BProtein interaction100%KIF7Protein interaction100%CYLDProtein interaction99%
Tissue Expression6 tissues
Ovary
100%
Lung
12%
Heart
10%
Liver
3%
Brain
2%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
GLI2SUFUTHOC1THOC3GSK3BKIF7CYLD
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt P10070
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.36Moderately Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.25 [0.17–0.36]
RankingsWhere GLI2 stands among ~20K protein-coding genes
  • #1,782of 20,598
    Most Researched227 Β· top 10%
  • #837of 5,498
    Most Pathogenic Variants91 Β· top quartile
  • #1,648of 17,882
    Most Constrained (LOEUF)0.36 Β· top 10%
Genes detectedGLI2
Sources retrieved27 papers
Response timeβ€”
πŸ“„ Sources
27β–Ό
1
Gli2, Hedgehog and TCR signalling.
PMID: 26336995
Oncotarget Β· 2015
1.00
2
KRAS Promotes GLI2-Dependent Transcription during Pancreatic Carcinogenesis.
PMID: 38896052
Cancer Res Commun Β· 2024
0.90
3
Another twist to the GLI code.
PMID: 33242334
Biochem J Β· 2020
0.84
4
[Culler-Jones syndrome polymorphism].
PMID: 41640148
Probl Endokrinol (Mosk) Β· 2025
0.80
5
GLI2/Parkin-mediated mitophagy promotes pazopanib resistance in clear cell renal cell carcinoma.
PMID: 40780617
Cell Signal Β· 2025
0.76