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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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GYS1
glycogen synthase 1
Chromosome 19 Β· 19q13.33
NCBI Gene: 2997Ensembl: ENSG00000104812.16HGNC: HGNC:4706UniProt: P13807
122PubMed Papers
21Diseases
0Drugs
42Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activityprotein bindingglycogen synthase activity, transferring glucose-1-phosphateglycogen biosynthetic processglycogen storage disease due to muscle and heart glycogen synthase deficiencydisorder of glycogen metabolismneurodegenerative diseaseGlycogen storage disease due to glycogenin deficiency
✦AI Summary

GYS1 (glycogen synthase 1) is the rate-limiting enzyme catalyzing glycogen biosynthesis by transferring glucose units from UDP-glucose to the non-reducing end of alpha-1,4-glucan chains 1. Beyond its canonical cytoplasmic role in glycogen metabolism, GYS1 functions as a nucleocytoplasmic shuttling protein that dynamically reorganizes into nuclear biomolecular condensates under glycogen depletion conditions, where it complexes with the transcription factor NONO/p54 to regulate myogenic gene expression during muscle differentiation 2. Pathologically, GYS1 mutations cause polyglucosan storage myopathies affecting skeletal and cardiac muscle, presenting with myopathy, cardiomyopathy, arrhythmia, and conduction abnormalities 3. Additionally, GYS1 is associated with metabolic cardiomyopathies among inherited carbohydrate metabolism disorders 1. Emerging evidence reveals context-dependent roles in disease: GYS1 promotes nuclear factor kappa B signaling in cancer-associated fibroblasts to enhance anti-PD-1 immunotherapy response 4, while forming a positive feedback loop with p53 in ovarian clear cell carcinoma that drives platinum chemoresistance through glycogen-mediated NADPH production 5. GYS1 also appears as a biomarker in non-small cell lung cancer extracellular vesicles 6. These findings demonstrate GYS1's multifaceted roles spanning metabolic homeostasis, transcriptional regulation, and cancer biology.

Sources cited
1
GYS1 is associated with metabolic cardiomyopathies among 9 diseases of glycogen metabolism presenting cardiac complications
PMID: 37239976
2
GYS1 mutations in horses and human polyglucosan storage myopathies cause muscle weakness, wasting, cardiomyopathy, arrhythmia, and cardiac failure
PMID: 26278982
3
GYS1 is a nucleocytoplasmic shuttling protein that forms nuclear biomolecular condensates with NONO/p54 under glycogen depletion and regulates myogenic transcription during myoblast differentiation
PMID: 40200092
4
GYS1 promotes NFΞΊB/p65-mediated CCL19 expression through competitive binding with PJA1, enhancing anti-PD-1 immunotherapy response in hepatocellular carcinoma
PMID: 40316306
5
GYS1 forms a positive feedback loop with p53 in ovarian clear cell carcinoma, promoting glycogen-mediated platinum chemoresistance through NADPH production
PMID: 40210982
6
GYS1 is a component of a seven-protein biomarker panel in extracellular vesicles for non-small cell lung cancer diagnosis
PMID: 40366616
Disease Associationsβ“˜21
glycogen storage disease due to muscle and heart glycogen synthase deficiencyOpen Targets
0.79Strong
disorder of glycogen metabolismOpen Targets
0.53Moderate
neurodegenerative diseaseOpen Targets
0.44Moderate
Glycogen storage disease due to glycogenin deficiencyOpen Targets
0.37Weak
genetic disorderOpen Targets
0.19Weak
neoplasmOpen Targets
0.09Suggestive
triple-negative breast cancerOpen Targets
0.09Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.08Suggestive
breast cancerOpen Targets
0.08Suggestive
rheumatoid arthritisOpen Targets
0.07Suggestive
left ventricular noncompactionOpen Targets
0.06Suggestive
hypertrophic cardiomyopathyOpen Targets
0.06Suggestive
familial spontaneous pneumothoraxOpen Targets
0.05Suggestive
hepatocellular carcinomaOpen Targets
0.05Suggestive
preeclampsiaOpen Targets
0.05Suggestive
hypersensitivity pneumonitis, familialOpen Targets
0.05Suggestive
pulmonary fibrosis and/or bone marrow failure, Telomere-related, 3Open Targets
0.04Suggestive
Kaposi sarcoma, susceptibility toOpen Targets
0.04Suggestive
Kaposi's sarcomaOpen Targets
0.04Suggestive
lung adenocarcinomaOpen Targets
0.04Suggestive
Muscle glycogen storage disease 0UniProt
Pathogenic Variants42
NM_002103.5(GYS1):c.678+1G>APathogenic
Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜…β˜†β˜†2026
NM_002103.5(GYS1):c.160dup (p.Thr54fs)Pathogenic
not provided|Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 54
NM_002103.5(GYS1):c.1615G>T (p.Glu539Ter)Pathogenic
Glycogen storage disease due to muscle and heart glycogen synthase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 539
NM_002103.5(GYS1):c.119-2_120delLikely pathogenic
not provided|Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜…β˜†β˜†2025
NM_002103.5(GYS1):c.1384C>T (p.Arg462Ter)Pathogenic
Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 462
NM_002103.5(GYS1):c.162_163del (p.Asp56fs)Pathogenic
Glycogen storage disease due to muscle and heart glycogen synthase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 56
NM_002103.5(GYS1):c.1645+1G>ALikely pathogenic
not provided|Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜…β˜†β˜†2023
NM_002103.5(GYS1):c.198dup (p.Pro67fs)Pathogenic
Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 67
NM_002103.5(GYS1):c.1793G>A (p.Trp598Ter)Pathogenic
Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 598
NM_002103.5(GYS1):c.1170-2A>GLikely pathogenic
Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜†β˜†β˜†2025
NM_002103.5(GYS1):c.1169+1G>CLikely pathogenic
Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜†β˜†β˜†2025
NM_002103.5(GYS1):c.7_8del (p.Leu3fs)Pathogenic
Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 3
NM_002103.5(GYS1):c.678+2T>GPathogenic
Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜†β˜†β˜†2025
NM_002103.5(GYS1):c.1358C>G (p.Ser453Ter)Pathogenic
Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 453
NM_002103.5(GYS1):c.540_553del (p.His180fs)Likely pathogenic
Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 180
NM_002103.5(GYS1):c.1234del (p.Ser412fs)Pathogenic
Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 412
NM_002103.5(GYS1):c.1422+1G>ALikely pathogenic
Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜†β˜†β˜†2024
NM_002103.5(GYS1):c.493-1G>CLikely pathogenic
Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜†β˜†β˜†2024
NM_002103.5(GYS1):c.721C>T (p.Arg241Ter)Pathogenic
Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 241
NM_002103.5(GYS1):c.502C>T (p.Gln168Ter)Pathogenic
Glycogen storage disease due to muscle and heart glycogen synthase deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 168
View on ClinVar β†—
Related Genes
PRKAG1Protein interaction100%PRKAA2Protein interaction100%PRKAA1Protein interaction100%PRKAB1Protein interaction100%SOX12Protein interaction99%PRKAB2Protein interaction98%
Tissue Expression6 tissues
Heart
100%
Lung
22%
Ovary
17%
Bone Marrow
13%
Liver
11%
Brain
9%
Gene Interaction Network
Click a node to explore
GYS1PRKAG1PRKAA2PRKAA1PRKAB1SOX12PRKAB2
PROTEIN STRUCTURE
Preparing viewer…
PDB7ZBN Β· 2.62 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.90LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.71 [0.57–0.90]
RankingsWhere GYS1 stands among ~20K protein-coding genes
  • #3,853of 20,598
    Most Researched122 Β· top quartile
  • #1,487of 5,498
    Most Pathogenic Variants42
  • #8,086of 17,882
    Most Constrained (LOEUF)0.90
Genes detectedGYS1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis Β· 2022
1.00
2
Neutrophils Fuel Effective Immune Responses through Gluconeogenesis and Glycogenesis.
PMID: 33306983
Cell Metab Β· 2021
0.90
3
Metabolic Cardiomyopathies and Cardiac Defects in Inherited Disorders of Carbohydrate Metabolism: A Systematic Review.
PMID: 37239976
Int J Mol Sci Β· 2023
0.80
4
Polyglucosan storage myopathies.
PMID: 26278982
Mol Aspects Med Β· 2015
0.70
5
FMO2
PMID: 40316306
J Immunother Cancer Β· 2025
0.60