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GeneE
28 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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H1-1
H1.1 linker histone, cluster member
Chromosome 6 · 6p22.2
NCBI Gene: 3024Ensembl: ENSG00000124610.5HGNC: HGNC:4715UniProt: Q02539
216PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingchromatinchromosome condensationnucleoplasmbreast carcinomaactinic keratosissebaceous of Jadassohn nevusHeadache
✦AI Summary

H1-1 encodes the H1.1 linker histone, a chr6 structural protein with specialized expression patterns and functions. H1.1 exhibits restricted tissue-specific expression, being found primarily in testis and thymus 1. In testis, H1.1 expression is specifically restricted to early round spermatids, representing postmeiotic sperm cells 1. The gene shows evolutionary conservation among higher primates but lacks cross-hybridization with other mammalian species 1. Unlike the major somatic H1 variants (H1.2-H1.5) that are expressed in most somatic cells, H1.1 demonstrates cell-type specific distribution 2. As a member of the linker histone family, H1.1 contributes to chr6 fiber formation and nucleosome organization, though different H1 subtypes may have distinct genomic distributions and regulatory roles 3. Recent evidence suggests individual H1 subtypes, including those in the H1.1-H1.5 replication-dependent group, can affect cellular differentiation processes in subtype-specific manners 4. The H1 family undergoes extensive post-translational modifications that regulate chr6 dynamics and gene expression 5. H1.1's specialized expression pattern during spermatogenesis suggests important roles in male reproductive cell development and chr6 remodeling.

Sources cited
1
H1.1 expression is restricted to testis and thymus, specifically to early round spermatids in testis, and shows evolutionary conservation in higher primates
PMID: 7989039
2
H1.1 is part of the H1.1-H1.5 subtype group with tissue-specific expression patterns, distinct from major somatic variants
PMID: 9049636
3
H1 subtypes including H1.1-H1.5 are replication-dependent and may have distinct genomic distributions and regulatory roles
PMID: 26477490
4
Individual H1 subtypes affect cellular differentiation in subtype-specific manners
PMID: 32391789
5
H1 histones undergo extensive post-translational modifications that regulate chromatin dynamics and gene expression
PMID: 26348411
Disease Associationsⓘ20
breast carcinomaOpen Targets
0.08Suggestive
actinic keratosisOpen Targets
0.06Suggestive
sebaceous of Jadassohn nevusOpen Targets
0.06Suggestive
HeadacheOpen Targets
0.05Suggestive
squamous cell carcinomaOpen Targets
0.05Suggestive
acute myeloid leukemiaOpen Targets
0.04Suggestive
pachyonychia congenitaOpen Targets
0.03Suggestive
neoplasmOpen Targets
0.02Suggestive
melanomaOpen Targets
0.02Suggestive
ataxia telangiectasiaOpen Targets
0.02Suggestive
prostate cancerOpen Targets
0.01Suggestive
achalasia-alacrima syndromeOpen Targets
0.01Suggestive
acute myeloid leukemia by FAB classificationOpen Targets
0.01Suggestive
bipolar disorderOpen Targets
0.01Suggestive
prostate adenocarcinomaOpen Targets
0.01Suggestive
schizophreniaOpen Targets
0.01Suggestive
infectionOpen Targets
0.01Suggestive
cancerOpen Targets
0.01Suggestive
breast cancerOpen Targets
0.00Suggestive
Alzheimer diseaseOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CDK2Protein interaction100%CDK1Protein interaction93%CCNE1Protein interaction88%CCNA2Protein interaction85%CDK4Protein interaction83%H2AC20Protein interaction83%
Tissue Expression6 tissues
Ovary
100%
Liver
0%
Lung
0%
Heart
0%
Brain
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
H1-1CDK2CDK1CCNE1CCNA2CDK4H2AC20
PROTEIN STRUCTURE
Preparing viewer…
PDB9J8O · 4.05 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.95LoF Tolerant
pLIⓘ
0.02Tolerant
Observed/Expected LoF2.08 [0.66–1.95]
RankingsWhere H1-1 stands among ~20K protein-coding genes
  • #1,919of 20,598
    Most Researched216 · top 10%
  • #17,662of 17,882
    Most Constrained (LOEUF)1.95
Genes detectedH1-1
Sources retrieved28 papers
Response time—
📄 Sources
28▼
1
Associations of Advanced Glycation End Products with Sleep Disorders in Chinese Adults.
PMID: 39408249
Nutrients · 2024
1.00
2
Expression and chromosomal mapping of the gene encoding the human histone H1.1.
PMID: 7989039
Hum Genet · 1994
0.90
3
Rapid exchange of histone H1.1 on chromatin in living human cells.
PMID: 11130728
Nature · 2000
0.84
4
Specificities and genomic distribution of somatic mammalian histone H1 subtypes.
PMID: 26477490
Biochim Biophys Acta · 2016
0.80
5
P-TEFb kinase complex phosphorylates histone H1 to regulate expression of cellular and HIV-1 genes.
PMID: 20551309
J Biol Chem · 2010
0.76