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30 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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H1-5
H1.5 linker histone, cluster member
Chromosome 6 · 6p22.1
NCBI Gene: 3009Ensembl: ENSG00000184357.5HGNC: HGNC:4719UniProt: P16401
196PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleusheterochromatinnucleoplasmprotein bindingbreast carcinomabreast cancersebaceous of Jadassohn nevusactinic keratosis
✦AI Summary

H1-5 (H1.5 linker histone) is a chr6-organizing protein that binds to nucleosomes and regulates multiple cellular processes through chr6 architecture modulation. H1.5 facilitates chr6 compaction and three-dimensional genome organization, with mutations in H1 genes acting as genetic drivers in B cell lymphomas by disrupting chr6 architecture and leading to derepression of developmentally silenced genes 1. The protein shows specific nuclear localization patterns, being universally enriched at the nuclear periphery and co-localizing with compacted DNA, distinct from other H1 variants 2. H1.5 contributes to centromere integrity by directly interacting with CENP-A nucleosomes, and its knockdown results in loss of centromeric α-satellite transcription, reduced CENP-A loading, and mitotic defects 3. Additionally, H1.5 regulates alternative splicing by binding over splice sites of short exons, where its association correlates with exon inclusion levels and RNA polymerase II stalling 4. The protein is downregulated in ovarian granulosa cell tumors compared to normal ovarian tissues, suggesting potential diagnostic significance 5. These functions establish H1.5 as a multifunctional chr6 regulator involved in genome organization, transcriptional control, centromere function, and RNA processing.

Sources cited
1
H1 mutations are genetic drivers in B cell lymphomas, disrupting chromatin architecture and leading to derepression of developmentally silenced genes
PMID: 33299181
2
H1.5 directly interacts with CENP-A nucleosomes and contributes to centromere integrity, with knockdown causing mitotic defects
PMID: 40568180
3
H1.5 is universally enriched at the nuclear periphery and co-localizes with compacted DNA
PMID: 38530350
4
H1.5 binds over splice sites of short exons and regulates alternative splicing by affecting RNA polymerase II stalling
PMID: 31076740
5
H1.5 is downregulated in ovarian granulosa cell tumors compared to normal ovarian tissues
PMID: 25023763
Disease Associationsⓘ20
breast carcinomaOpen Targets
0.10Suggestive
breast cancerOpen Targets
0.08Suggestive
sebaceous of Jadassohn nevusOpen Targets
0.07Suggestive
actinic keratosisOpen Targets
0.07Suggestive
Gorham-Stout diseaseOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.06Suggestive
squamous cell carcinomaOpen Targets
0.06Suggestive
osteoporosisOpen Targets
0.05Suggestive
postmenopausal osteoporosisOpen Targets
0.05Suggestive
12q14 microdeletion syndromeOpen Targets
0.05Suggestive
melorheostosisOpen Targets
0.04Suggestive
pyknoachondrogenesisOpen Targets
0.04Suggestive
osteomesopyknosisOpen Targets
0.04Suggestive
Dacryocystitis - osteopoikilosisOpen Targets
0.04Suggestive
dacryocystitis-osteopoikilosis syndromeOpen Targets
0.04Suggestive
gnathodiaphyseal dysplasiaOpen Targets
0.04Suggestive
infectionOpen Targets
0.04Suggestive
autosomal recessive hypophosphatemic ricketsOpen Targets
0.04Suggestive
ulcerative colitisOpen Targets
0.03Suggestive
non-small cell lung carcinomaOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
H2AC8Protein interaction100%H2BC14Protein interaction100%H2AC13Protein interaction99%H3C2Protein interaction99%H3C11Protein interaction99%L3MBTL1Protein interaction99%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
1%
Brain
0%
Liver
0%
Ovary
0%
Heart
0%
Gene Interaction Network
Click a node to explore
H1-5H2AC8H2BC14H2AC13H3C2H3C11L3MBTL1
PROTEIN STRUCTURE
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PDB2RHI · 1.66 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.69LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.90 [0.49–1.69]
RankingsWhere H1-5 stands among ~20K protein-coding genes
  • #2,162of 20,598
    Most Researched196 · top quartile
  • #16,050of 17,882
    Most Constrained (LOEUF)1.69
Genes detectedH1-5
Sources retrieved30 papers
Response time—
📄 Sources
30▼
1
Histone H1 loss drives lymphoma by disrupting 3D chromatin architecture.
PMID: 33299181
Nature · 2021
1.00
2
Linker Histone H1.5 Contributes to Centromere Integrity in Human Cells.
PMID: 40568180
bioRxiv · 2025
0.90
3
The role of linker histone H1 modifications in the regulation of gene expression and chromatin dynamics.
PMID: 26348411
Biochim Biophys Acta · 2016
0.84
4
Linker histone H1.5 is an underestimated factor in differentiation and carcinogenesis.
PMID: 33214908
Environ Epigenet · 2020
0.80
5
Analysis of the interplay between MeCP2 and histone H1 during
PMID: 37976174
Epigenetics · 2023
0.76