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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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HARS1
histidyl-tRNA synthetase 1
Chromosome 5 Β· 5q31.3
NCBI Gene: 3035Ensembl: ENSG00000170445.16HGNC: HGNC:4816UniProt: B4DDD8
92PubMed Papers
22Diseases
0Drugs
10Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
cytosolhistidyl-tRNA aminoacylationhistidine-tRNA ligase activityATP bindingautosomal dominant Charcot-Marie-Tooth disease type 2WUsher syndrome type 3Bspastic ataxiaCharcot-Marie-Tooth disease type 2
✦AI Summary

HARS1 (histidyl-tRNA synthetase 1) catalyzes the ATP-dependent ligation of histidine to its cognate tRNA via formation of a His-AMP intermediate, a critical step in cytoplasmic protein translation 1. Beyond its canonical role in aminoacylation, HARS1 plays a role in axon guidance 2. Pathogenic HARS1 variants cause disease through a dominant-negative mechanism. CMT-associated HARS1 mutations (V155G, Y330C, R137Q) attenuate protein synthesis, increase eIF2Ξ± phosphorylation, and impair neurite outgrowth in neuronal models and developing zebrafish 34. Mutant HARS1 proteins form heterodimers with wild-type enzyme, disrupting normal function 3. The D364Y mutation causes protein aggregation and inhibits neuronal process formation, effects reversible by valproic acid 5. Clinically, HARS1 mutations associate with autosomal-dominant Charcot-Marie-Tooth disease type 2W (CMT2W) and autosomal-recessive Usher syndrome type 3B 6. HARS1 variants appear in approximately 1.22% of CMT patients 6. Bi-allelic mutations cause a novel multisystem ataxic syndrome with severely impaired HARS1 expression and enzymatic activity 7. Pathogenic variants also occur in ALS patients at lower frequency 8.

Sources cited
1
HARS1 catalyzes ATP-dependent ligation of histidine to cognate tRNA via His-AMP intermediate
PMID: 29235198
2
HARS1 plays a role in axon guidance
PMID: 26072516
3
CMT-associated HARS1 mutations attenuate protein synthesis, increase eIF2Ξ± phosphorylation, and impair neurite/axon outgrowth in PC12 cells and zebrafish models
PMID: 32543048
4
HARS1 mutations cause disease through dominant-negative mechanism involving increased eIF2Ξ± phosphorylation and decreased protein translation
PMID: 32940403
5
D364Y HARS1 mutation causes protein aggregation and inhibits neuronal process formation, reversible by valproic acid
PMID: 35380399
6
HARS1 variants found in 1.22% of CMT patients and associated with CMT2, expand phenotypic spectrum of ARS gene mutations
PMID: 34813128
7
Bi-allelic HARS1 mutations cause multisystem ataxic syndrome with severely impaired HARS1 expression and enzymatic activity
PMID: 32333447
8
HARS1 variants identified in ALS patients as possible pathogenic variants in 9% of ALS cohort
PMID: 37849306
Disease Associationsβ“˜22
autosomal dominant Charcot-Marie-Tooth disease type 2WOpen Targets
0.76Strong
Usher syndrome type 3BOpen Targets
0.54Moderate
spastic ataxiaOpen Targets
0.51Moderate
Charcot-Marie-Tooth disease type 2Open Targets
0.50Moderate
Intellectual disabilityOpen Targets
0.49Moderate
DysarthriaOpen Targets
0.48Moderate
peripheral neuropathyOpen Targets
0.46Moderate
microcephalyOpen Targets
0.43Moderate
Cerebellar atrophyOpen Targets
0.43Moderate
Distal muscle weaknessOpen Targets
0.43Moderate
DysmetriaOpen Targets
0.43Moderate
essential tremorOpen Targets
0.43Moderate
flatfootOpen Targets
0.43Moderate
Hammer Toe SyndromeOpen Targets
0.43Moderate
Joint hypermobilityOpen Targets
0.43Moderate
NystagmusOpen Targets
0.43Moderate
Oculomotor apraxiaOpen Targets
0.43Moderate
scoliosisOpen Targets
0.43Moderate
TremorOpen Targets
0.43Moderate
Urinary urgencyOpen Targets
0.43Moderate
Charcot-Marie-Tooth disease, axonal, type 2WUniProt
Usher syndrome 3BUniProt
Pathogenic Variants10
NM_002109.6(HARS1):c.395C>T (p.Thr132Ile)Pathogenic
Autosomal dominant Charcot-Marie-Tooth disease type 2W|not provided
β˜…β˜…β˜†β˜†2022β†’ Residue 132
NM_002109.6(HARS1):c.*331A>TLikely pathogenic
HARS1-related multi-system ataxia syndrome
β˜…β˜†β˜†β˜†2026
NM_002109.6(HARS1):c.168del (p.Thr58fs)Likely pathogenic
Autosomal dominant Charcot-Marie-Tooth disease type 2W
β˜…β˜†β˜†β˜†2021β†’ Residue 58
NM_002109.6(HARS1):c.730delGPathogenic
10 conditions|Spastic ataxia
β˜…β˜†β˜†β˜†2021
NM_002109.6(HARS1):c.910_912dup (p.Leu305dup)Pathogenic
11 conditions|Spastic ataxia
β˜…β˜†β˜†β˜†2021β†’ Residue 305
NM_002109.6(HARS1):c.616G>T (p.Asp206Tyr)Pathogenic
10 conditions|Spastic ataxia
β˜…β˜†β˜†β˜†2021β†’ Residue 206
NM_002109.6(HARS1):c.397G>T (p.Val133Phe)Likely pathogenic
Autosomal dominant Charcot-Marie-Tooth disease type 2W
β˜…β˜†β˜†β˜†2018β†’ Residue 133
NM_002109.6(HARS1):c.1090G>T (p.Asp364Tyr)Pathogenic
Autosomal dominant Charcot-Marie-Tooth disease type 2W
β˜†β˜†β˜†β˜†2015β†’ Residue 364
NM_002109.6(HARS1):c.401C>A (p.Pro134His)Pathogenic
Autosomal dominant Charcot-Marie-Tooth disease type 2W
β˜†β˜†β˜†β˜†2015β†’ Residue 134
NM_002109.6(HARS1):c.525T>G (p.Asp175Glu)Pathogenic
Autosomal dominant Charcot-Marie-Tooth disease type 2W
β˜†β˜†β˜†β˜†2015β†’ Residue 175
View on ClinVar β†—
Related Genes
MARS1Protein interaction100%LARS1Protein interaction100%KARS1Protein interaction100%IARS1Protein interaction100%AIMP1Protein interaction100%LARS2Protein interaction98%
Tissue Expression6 tissues
Brain
100%
Liver
76%
Bone Marrow
74%
Ovary
64%
Heart
64%
Lung
60%
Gene Interaction Network
Click a node to explore
HARS1MARS1LARS1KARS1IARS1AIMP1LARS2
PROTEIN STRUCTURE
Preparing viewer…
PDB8YOR Β· 2.30 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.96LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.69 [0.50–0.96]
RankingsWhere HARS1 stands among ~20K protein-coding genes
  • #5,190of 20,598
    Most Researched92
  • #2,848of 5,498
    Most Pathogenic Variants10
  • #9,000of 17,882
    Most Constrained (LOEUF)0.96
Genes detectedHARS1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis Β· 2022
1.00
2
Genetic overlap between ALS and other neurodegenerative or neuromuscular disorders.
PMID: 37849306
Amyotroph Lateral Scler Frontotemporal Degener Β· 2024
0.90
3
Variants of aminoacyl-tRNA synthetase genes in Charcot-Marie-Tooth disease: A Korean cohort study.
PMID: 34813128
J Peripher Nerv Syst Β· 2022
0.80
4
Bi-allelic mutations in HARS1 severely impair histidyl-tRNA synthetase expression and enzymatic activity causing a novel multisystem ataxic syndrome.
PMID: 32333447
Hum Mutat Β· 2020
0.70
5
Evidence for a dominant-negative mechanism in HARS1-mediated peripheral neuropathy.
PMID: 32940403
FEBS J Β· 2021
0.60