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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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HOMER3
homer scaffold protein 3
Chromosome 19 · 19p13.11
NCBI Gene: 9454Ensembl: ENSG00000051128.20HGNC: HGNC:17514UniProt: Q9NSC5
66PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
negative regulation of calcineurin-NFAT signaling cascadeprotein bindingidentical protein bindingplasma membraneacute tonsillitisAbruptio Placentaecentral nervous system cancerkeratoconus 5
✦AI Summary

HOMER3 is a postsynaptic density scaffolding protein that serves dual roles in synaptic signaling and disease pathology. In normal neurological function, HOMER3 binds and cross-links cytoplasmic regions of metabotropic glutamate receptors (GRM1/GRM5) with intracellular calcium release channels (ITPR1), coupling surface receptor activation to intracellular calcium mobilization and maintaining glutamatergic synapse plasticity [UniProt]. Additionally, HOMER3 negatively regulates T cell activation by competing with calcineurin for NFAT binding, thereby inhibiting pro-inflammatory responses. Disease relevance of HOMER3 is substantial. In autoimmune vestibulocerebellar syndromes, HOMER3 serves as a synaptic autoantigen target, with anti-HOMER3 antibodies implicated in cerebellar dysfunction and ataxia 1. Conversely, HOMER3 overexpression promotes malignancy across multiple cancer types: in prostate cancer, HOMER3 activates YAP1 signaling and upregulates CD274 (PD-L1), fostering immunosuppression 2; in glioma, HOMER3 drives proliferation and metastasis through Wnt/β-catenin/EMT pathways 3; in non-small cell lung cancer, HOMER3 enhances mitochondrial metabolism via GABPB1 4; in oral squamous cell carcinoma, HOMER3 promotes progression through TRPV6-mediated calcium influx and chemoresistance 5; and in hepatocellular carcinoma, HOMER3 activates the miR-361/GPNMB axis 6. Notably, HOMER3 and HOMER2 inhibit amyloid-β production by regulating APP processing and trafficking, suggesting neuroprotective potential in Alzheimer's disease 78. These findings identify HOMER3 as a critical determinant in both neuroinflammatory diseases and oncogenic progression.

Sources cited
1
In autoimmune vestibulocerebellar syndromes, HOMER3 serves as a synaptic autoantigen target, with anti-HOMER3 antibodies implicated in cerebellar dysfunction and ataxia .
PMID: 31958862
2
Conversely, HOMER3 overexpression promotes malignancy across multiple cancer types: in prostate cancer, HOMER3 activates YAP1 signaling and upregulates CD274 (PD-L1), fostering immunosuppression ; in glioma, HOMER3 drives proliferation and metastasis through Wnt/β-catenin/EMT pathways ; in non-small cell lung cancer, HOMER3 enhances mitochondrial metabolism via GABPB1 ; in oral squamous cell carcinoma, HOMER3 promotes progression through TRPV6-mediated calcium influx and chemoresistance ; and in hepatocellular carcinoma, HOMER3 activates the miR-361/GPNMB axis .
PMID: 40849586
3
Conversely, HOMER3 overexpression promotes malignancy across multiple cancer types: in prostate cancer, HOMER3 activates YAP1 signaling and upregulates CD274 (PD-L1), fostering immunosuppression ; in glioma, HOMER3 drives proliferation and metastasis through Wnt/β-catenin/EMT pathways ; in non-small cell lung cancer, HOMER3 enhances mitochondrial metabolism via GABPB1 ; in oral squamous cell carcinoma, HOMER3 promotes progression through TRPV6-mediated calcium influx and chemoresistance ; and in hepatocellular carcinoma, HOMER3 activates the miR-361/GPNMB axis .
PMID: 40205485
4
Conversely, HOMER3 overexpression promotes malignancy across multiple cancer types: in prostate cancer, HOMER3 activates YAP1 signaling and upregulates CD274 (PD-L1), fostering immunosuppression ; in glioma, HOMER3 drives proliferation and metastasis through Wnt/β-catenin/EMT pathways ; in non-small cell lung cancer, HOMER3 enhances mitochondrial metabolism via GABPB1 ; in oral squamous cell carcinoma, HOMER3 promotes progression through TRPV6-mediated calcium influx and chemoresistance ; and in hepatocellular carcinoma, HOMER3 activates the miR-361/GPNMB axis .
PMID: 38081871
5
Conversely, HOMER3 overexpression promotes malignancy across multiple cancer types: in prostate cancer, HOMER3 activates YAP1 signaling and upregulates CD274 (PD-L1), fostering immunosuppression ; in glioma, HOMER3 drives proliferation and metastasis through Wnt/β-catenin/EMT pathways ; in non-small cell lung cancer, HOMER3 enhances mitochondrial metabolism via GABPB1 ; in oral squamous cell carcinoma, HOMER3 promotes progression through TRPV6-mediated calcium influx and chemoresistance ; and in hepatocellular carcinoma, HOMER3 activates the miR-361/GPNMB axis .
PMID: 41326663
6
Conversely, HOMER3 overexpression promotes malignancy across multiple cancer types: in prostate cancer, HOMER3 activates YAP1 signaling and upregulates CD274 (PD-L1), fostering immunosuppression ; in glioma, HOMER3 drives proliferation and metastasis through Wnt/β-catenin/EMT pathways ; in non-small cell lung cancer, HOMER3 enhances mitochondrial metabolism via GABPB1 ; in oral squamous cell carcinoma, HOMER3 promotes progression through TRPV6-mediated calcium influx and chemoresistance ; and in hepatocellular carcinoma, HOMER3 activates the miR-361/GPNMB axis .
PMID: 38266459
Disease Associationsⓘ20
acute tonsillitisOpen Targets
0.25Weak
Abruptio PlacentaeOpen Targets
0.15Weak
central nervous system cancerOpen Targets
0.14Weak
keratoconus 5Open Targets
0.11Weak
hepatocellular carcinomaOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.08Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.07Suggestive
triple-negative breast cancerOpen Targets
0.07Suggestive
breast cancerOpen Targets
0.06Suggestive
non-small cell lung carcinomaOpen Targets
0.05Suggestive
lung cancerOpen Targets
0.04Suggestive
cancerOpen Targets
0.04Suggestive
gliomaOpen Targets
0.03Suggestive
colorectal cancerOpen Targets
0.02Suggestive
multiple system atrophy, cerebellar typeOpen Targets
0.02Suggestive
urinary bladder carcinomaOpen Targets
0.02Suggestive
oral squamous cell carcinomaOpen Targets
0.02Suggestive
CirrhosisOpen Targets
0.02Suggestive
coronary artery diseaseOpen Targets
0.02Suggestive
hepatitis B virus infectionOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
DBN1Protein interaction99%GRM1Protein interaction99%GRM5Protein interaction99%DLGAP1Protein interaction99%DLGAP3Protein interaction92%SHANK1Protein interaction90%
Tissue Expression6 tissues
Lung
100%
Ovary
68%
Brain
61%
Bone Marrow
48%
Heart
39%
Liver
20%
Gene Interaction Network
Click a node to explore
HOMER3DBN1GRM1GRM5DLGAP1DLGAP3SHANK1
PROTEIN STRUCTURE
Preparing viewer…
PDB2P8V · 1.85 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.24LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.91 [0.67–1.24]
RankingsWhere HOMER3 stands among ~20K protein-coding genes
  • #7,074of 20,598
    Most Researched66
  • #13,009of 17,882
    Most Constrained (LOEUF)1.24
Genes detectedHOMER3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Autoimmune Vestibulocerebellar Syndromes.
PMID: 31958862
Semin Neurol · 2020
1.00
2
HOMER3 orchestrates SRC-YAP1 activity that promotes tumor cell growth and antagonizes anti-tumor immunotherapy in prostate cancer.
PMID: 40849586
Oncogene · 2025
0.90
3
ELK4 induced upregulation of HOMER3 promotes the proliferation and metastasis in glioma via Wnt/β-catenin/EMT signaling pathway.
PMID: 40205485
Biol Direct · 2025
0.80
4
HOMER3 promotes non-small cell lung cancer growth and metastasis primarily through GABPB1-mediated mitochondrial metabolism.
PMID: 38081871
Cell Death Dis · 2023
0.70
5
HOMER3 drives oral squamous cell carcinoma progression through TRPV6 calcium influx and TUBB3 microtubule stabilization.
PMID: 41326663
Oncogene · 2026
0.60