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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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HPCAL1
hippocalcin like 1
Chromosome 2 · 2p25.1
NCBI Gene: 3241Ensembl: ENSG00000115756.14HGNC: HGNC:5145UniProt: O75544
60PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingcalcium ion bindingregulation of signal transductionmembranevascular diseasemale reproductive system diseasehemangioma of subcutaneous tissuehypertrophic cardiomyopathy
✦AI Summary

HPCAL1 (hippocalcin-like 1) is a calcium-binding protein that functions as a multifaceted regulator of cellular metabolism and cell fate decisions. Mechanistically, HPCAL1 directly binds to and regulates key signaling proteins: it inhibits RUVBL1-mediated mTOR pathway activation to suppress lipid biosynthesis 1, enhances LDHA phosphorylation to promote glycolytic metabolism in lung cancer 2, and suppresses TGF-β signaling in hepatic stellate cells through Smad2 ubiquitination regulation 3. HPCAL1 also serves as a selective autophagy receptor in chaperone-mediated autophagy pathways, promoting degradation of ferroptosis-related proteins 45. Clinically, HPCAL1 shows complex disease associations. High HPCAL1 expression correlates with poor prognosis in cholangiocarcinoma and non-small cell lung carcinoma, and is an independent predictor of reduced overall and relapse-free survival 62. Conversely, HPCAL1 loss in hepatocellular carcinoma renders tumors mTORC1-addicted and sensitive to mTOR inhibitors 1. HPCAL1 was identified as a biomarker in idiopathic pulmonary fibrosis 7 and functions as a fibrogenesis suppressor in liver fibrosis 3. In neural tissue, HPCAL1 is a layer-specific marker of primate visual cortex 8. These divergent roles suggest HPCAL1 functions as a context-dependent metabolic and signaling node with distinct therapeutic implications across disease types.

Sources cited
1
HPCAL1 negatively regulates mTOR signaling and de novo lipid biosynthesis by directly binding RUVBL1, suppressing hepatocellular carcinoma tumorigenesis
PMID: 36438486
2
HPCAL1 directly binds LDHA and enhances SRC-mediated LDHA phosphorylation to promote glycolytic metabolism and non-small cell lung carcinoma growth
PMID: 35102488
3
HPCAL1 suppresses TGF-β signaling in hepatic stellate cells by regulating Smad2 ubiquitination, acting as a fibrogenesis suppressor in liver fibrosis
PMID: 39910671
4
HPCAL1 is recognized and degraded by HSPA8 via chaperone-mediated autophagy through its KFERQ motif, relevant to ferroptosis and intervertebral disc degeneration
PMID: 40898415
5
HPCAL1 functions as a downstream autophagy receptor selectively required for autophagy-dependent ferroptosis in cancer cells
PMID: 36734418
6
High HPCAL1 expression is an independent poor prognostic factor in cholangiocarcinoma, associated with advanced TNM stage and reduced survival
PMID: 35645147
7
HPCAL1 was identified as a potential biomarker for idiopathic pulmonary fibrosis using machine learning analysis of differentially expressed genes
PMID: 37783761
8
HPCAL1 is a layer-specific marker of primate visual cortex excitatory neurons identified through single-cell RNA sequencing
PMID: 36371428
Disease Associationsⓘ20
vascular diseaseOpen Targets
0.31Weak
male reproductive system diseaseOpen Targets
0.31Weak
hemangioma of subcutaneous tissueOpen Targets
0.29Weak
hypertrophic cardiomyopathyOpen Targets
0.28Weak
multinodular goiterOpen Targets
0.27Weak
Genu valgumOpen Targets
0.23Weak
Genu varumOpen Targets
0.23Weak
coronary artery diseaseOpen Targets
0.20Weak
bipolar disorderOpen Targets
0.18Weak
cataract 13 with adult I phenotypeOpen Targets
0.12Weak
squamous cell carcinomaOpen Targets
0.10Weak
hepatocellular carcinomaOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.09Suggestive
Alzheimer diseaseOpen Targets
0.08Suggestive
poisoningOpen Targets
0.08Suggestive
glioblastoma multiformeOpen Targets
0.08Suggestive
cholangiocarcinomaOpen Targets
0.07Suggestive
acute myeloid leukemiaOpen Targets
0.07Suggestive
cancerOpen Targets
0.06Suggestive
Neoplasm of the liverOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LRRIQ1Shared pathway100%DBNDD1Shared pathway100%AFAP1Shared pathway100%NCOA5Shared pathway100%PPP6R3Shared pathway100%RGS22Shared pathway100%
Tissue Expression6 tissues
Lung
100%
Liver
57%
Brain
45%
Heart
22%
Bone Marrow
18%
Ovary
14%
Gene Interaction Network
Click a node to explore
HPCAL1LRRIQ1DBNDD1AFAP1NCOA5PPP6R3RGS22
PROTEIN STRUCTURE
Preparing viewer…
PDB5T7C · NMR
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.94LoF Tolerant
pLIⓘ
0.05Tolerant
Observed/Expected LoF0.52 [0.31–0.94]
RankingsWhere HPCAL1 stands among ~20K protein-coding genes
  • #7,668of 20,598
    Most Researched60
  • #8,786of 17,882
    Most Constrained (LOEUF)0.94
Genes detectedHPCAL1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Identifying potential biomarkers of idiopathic pulmonary fibrosis through machine learning analysis.
PMID: 37783761
Sci Rep · 2023
1.00
2
Hippocalcin-Like 1 blunts liver lipid metabolism to suppress tumorigenesis via directly targeting RUVBL1-mTOR signaling.
PMID: 36438486
Theranostics · 2022
0.90
3
UCHL1 alleviates nucleus pulposus cell senescence by promoting chaperone-mediated autophagy antagonizing autophagy-dependent ferroptosis through deubiquitination of HSPA8.
PMID: 40898415
Autophagy · 2025
0.80
4
Expressional and prognostic value of HPCAL1 in cholangiocarcinoma via integrated bioinformatics analyses and experiments.
PMID: 35645147
Cancer Med · 2023
0.70
5
Identification of visual cortex cell types and species differences using single-cell RNA sequencing.
PMID: 36371428
Nat Commun · 2022
0.60