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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
IFT122
intraflagellar transport 122
Chromosome 3 Β· 3q21.3-q22.1
NCBI Gene: 55764Ensembl: ENSG00000163913.14HGNC: HGNC:13556UniProt: A0A8I5KSG5
42PubMed Papers
21Diseases
0Drugs
91Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
cilium assemblyprotein carrier activityintraciliary transportprotein localization to non-motile ciliumcranioectodermal dysplasiaautoimmune lymphoproliferative syndrome type 2BAutoimmune lymphoproliferative syndrome with recurrent viral infectionsglaucoma
✦AI Summary

IFT122 is a component of the intraflagellar transport complex A (IFT-A), essential for retrograde ciliary transport and ciliary protein trafficking 12. It plays a critical structural role connecting the core and peripheral subcomplexes of IFT-A 2. IFT122 is required for primary cilia assembly and maintenance during embryonic development, particularly in neural tube and limb patterning 3. The protein acts as a negative regulator of Sonic Hedgehog signaling by facilitating ciliary entry of signaling components like Smoothened 2. IFT122 mutations cause cranioectodermal dysplasia (CED/Sensenbrenner syndrome), an autosomal-recessive ciliopathy characterized by craniofacial, skeletal, and ectodermal abnormalities 45. Disease-associated missense mutations impair ciliary protein trafficking without completely preventing cilia formation, reducing ciliary localization of regulatory proteins like ARL13B and INPP5E 26. IFT122 mutations also associate with retinitis pigmentosa, where defective intraflagellar transport impairs photoreceptor opsin trafficking and causes progressive retinal degeneration 7. Complete IFT122 loss causes embryonic lethality with severe developmental defects including neural tube and limb malformations 3.

Sources cited
1
IFT122 as component of IFT-A complex required for retrograde ciliary transport and GPCR entry into cilia
PMID: 27932497
2
IFT122 connects core and peripheral IFT-A subcomplexes; ciliopathy mutations impair protein trafficking; CED-associated mutations disrupt Smoothened ciliary entry
PMID: 29220510
3
IFT122 null embryos show embryonic lethality, cilia defects, and impaired Shh signaling in neural tube and limb patterning
PMID: 19000668
4
IFT122 mutations cause cranioectodermal dysplasia with reduced primary cilia frequency and length
PMID: 20493458
5
Novel IFT122 mutations in cranioectodermal dysplasia patients
PMID: 26792575
6
IFT122 compound heterozygous variants cause infantile cholestasis by impairing ciliogenesis and disrupting ARL13B and INPP5E ciliary localization
PMID: 41401927
7
IFT122 missense variant associated with retinitis pigmentosa in dogs; ift122 loss in zebrafish impairs opsin transport and causes photoreceptor degeneration
PMID: 33606121
Disease Associationsβ“˜21
cranioectodermal dysplasiaOpen Targets
0.84Strong
autoimmune lymphoproliferative syndrome type 2BOpen Targets
0.37Weak
Autoimmune lymphoproliferative syndrome with recurrent viral infectionsOpen Targets
0.37Weak
glaucomaOpen Targets
0.30Weak
Rod-cone dystrophyOpen Targets
0.27Weak
HypercholesterolemiaOpen Targets
0.26Weak
Parkinson diseaseOpen Targets
0.23Weak
disease of peritoneumOpen Targets
0.23Weak
inherited hemoglobinopathyOpen Targets
0.23Weak
Tietze syndromeOpen Targets
0.20Weak
genetic disorderOpen Targets
0.19Weak
connective tissue diseaseOpen Targets
0.18Weak
prostate carcinomaOpen Targets
0.13Weak
splenic diseaseOpen Targets
0.13Weak
microcephalyOpen Targets
0.11Weak
neoplasmOpen Targets
0.09Suggestive
ischemiaOpen Targets
0.07Suggestive
Syndactyly type 2Open Targets
0.07Suggestive
polydactyly of a triphalangeal thumbOpen Targets
0.06Suggestive
syndactyly type 4Open Targets
0.06Suggestive
Cranioectodermal dysplasia 1UniProt
Pathogenic Variants91
NM_052989.3(IFT122):c.1783_1784del (p.Val595fs)Pathogenic
Cranioectodermal dysplasia 1
β˜…β˜…β˜†β˜†2025β†’ Residue 595
NM_052989.3(IFT122):c.565C>T (p.Arg189Ter)Pathogenic
Cranioectodermal dysplasia 1|IFT122-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 189
NM_052989.3(IFT122):c.592_595del (p.Glu198fs)Pathogenic
Cranioectodermal dysplasia 1
β˜…β˜…β˜†β˜†2025β†’ Residue 198
NM_052989.3(IFT122):c.2313C>A (p.Tyr771Ter)Pathogenic
Cranioectodermal dysplasia 1
β˜…β˜…β˜†β˜†2025β†’ Residue 771
NM_052989.3(IFT122):c.2017C>T (p.Arg673Ter)Pathogenic
not provided|Cranioectodermal dysplasia 1
β˜…β˜…β˜†β˜†2025β†’ Residue 673
NM_052989.3(IFT122):c.1963del (p.Glu655fs)Pathogenic
Cranioectodermal dysplasia 1
β˜…β˜…β˜†β˜†2025β†’ Residue 655
NM_052989.3(IFT122):c.3426_3430del (p.Ser1143fs)Pathogenic
Cranioectodermal dysplasia 1
β˜…β˜…β˜†β˜†2024β†’ Residue 1143
NM_052989.3(IFT122):c.273-281_273-271delPathogenic
Cranioectodermal dysplasia 1|IFT122-related disorder
β˜…β˜…β˜†β˜†2024
NM_052989.3(IFT122):c.3265+1G>APathogenic
not provided|Cranioectodermal dysplasia 1
β˜…β˜…β˜†β˜†2024
NM_052989.3(IFT122):c.3013C>T (p.Gln1005Ter)Pathogenic
Cranioectodermal dysplasia 1
β˜…β˜…β˜†β˜†2024β†’ Residue 1005
NM_052989.3(IFT122):c.916_917del (p.Leu306fs)Pathogenic
Cranioectodermal dysplasia 1
β˜…β˜…β˜†β˜†2024β†’ Residue 306
NM_052989.3(IFT122):c.3553C>T (p.Arg1185Ter)Pathogenic
Cranioectodermal dysplasia 1|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 1185
NM_052989.3(IFT122):c.356G>A (p.Trp119Ter)Pathogenic
Cranioectodermal dysplasia 1
β˜…β˜…β˜†β˜†2024β†’ Residue 119
NM_052989.3(IFT122):c.1148-1G>CPathogenic
not provided|Cranioectodermal dysplasia 1
β˜…β˜…β˜†β˜†2023
NM_052989.3(IFT122):c.272+1G>ALikely pathogenic
Cranioectodermal dysplasia 1
β˜…β˜…β˜†β˜†2022
NM_052989.3(IFT122):c.2828A>G (p.Tyr943Cys)Pathogenic
not provided|Cranioectodermal dysplasia 1
β˜…β˜…β˜†β˜†2021β†’ Residue 943
NM_052989.3(IFT122):c.3391+2T>CLikely pathogenic
Cranioectodermal dysplasia 1
β˜…β˜†β˜†β˜†2026
NM_052989.3(IFT122):c.2668C>T (p.Arg890Ter)Pathogenic
Cranioectodermal dysplasia 1
β˜…β˜†β˜†β˜†2026β†’ Residue 890
NM_052989.3(IFT122):c.1402C>T (p.Gln468Ter)Pathogenic
Cranioectodermal dysplasia 1
β˜…β˜†β˜†β˜†2026β†’ Residue 468
NM_052989.3(IFT122):c.273-341dupPathogenic
Cranioectodermal dysplasia 1
β˜…β˜†β˜†β˜†2025
View on ClinVar β†—
Related Genes
GPR161Protein interaction100%IFT46Protein interaction100%IFT22Protein interaction100%IFTAPProtein interaction100%IFT74Protein interaction100%IFT20Protein interaction99%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
69%
Lung
32%
Brain
29%
Liver
27%
Heart
23%
Gene Interaction Network
Click a node to explore
IFT122GPR161IFT46IFT22IFTAPIFT74IFT20
PROTEIN STRUCTURE
Preparing viewer…
PDB8BBE Β· 3.50 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.81LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.69 [0.58–0.81]
RankingsWhere IFT122 stands among ~20K protein-coding genes
  • #9,886of 20,598
    Most Researched42
  • #843of 5,498
    Most Pathogenic Variants91 Β· top quartile
  • #6,820of 17,882
    Most Constrained (LOEUF)0.81
Genes detectedIFT122
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
PMID: 24027799
1.00
2
Defective ciliogenesis, embryonic lethality and severe impairment of the Sonic Hedgehog pathway caused by inactivation of the mouse complex A intraflagellar transport gene Ift122/Wdr10, partially overlapping with the DNA repair gene Med1/Mbd4.
PMID: 19000668
Dev Biol Β· 2009
0.90
3
Ciliopathy-associated mutations of IFT122 impair ciliary protein trafficking but not ciliogenesis.
PMID: 29220510
Hum Mol Genet Β· 2018
0.80
4
[Clinical features and molecular mechanism of infantile cholestasis caused by IFT122 gene variants].
PMID: 41401927
Zhonghua Er Ke Za Zhi Β· 2026
0.70
5
A missense variant in IFT122 associated with a canine model of retinitis pigmentosa.
PMID: 33606121
Hum Genet Β· 2021
0.60