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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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IFT88
intraflagellar transport 88
Chromosome 13 · 13q12.11
NCBI Gene: 8100Ensembl: ENSG00000032742.19HGNC: HGNC:20606UniProt: A0A140VJL7
72PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
intraciliary transport particle Acentrioleciliary basal bodyprotein bindingretinitis pigmentosaalcohol drinkingnerve plexus diseaseinsomnia
✦AI Summary

IFT88 is a core component of the intraflagellar transport-B (IFT-B) complex essential for primary cilium assembly and homeostasis 1. As a positive regulator of cilium biogenesis, IFT88 facilitates intraciliary transport and maintains ciliary structure across multiple cell types 1. Post-translational UFMylation of IFT88 at lysine 572 by UFL1 protects it from PJA2-mediated ubiquitination and proteasomal degradation, preserving ciliary function 2. Beyond ciliary roles, IFT88 exhibits cilium-independent functions including spindle orientation and actin organization 1. Mechanistically, IFT88 integrates metabolic sensing through asparagine synthetase-dependent glutamine metabolism during nutrient stress 3. In chondrocytes, IFT88 inhibits TRPV4-mediated calcium influx under excessive mechanical stress, protecting cartilage from calcification and intervertebral disc degeneration 4. IFT88 is critical for craniofacial development, with mutations causing cleft lip and palate through disrupted Sonic hedgehog signaling in cranial neural crest-derived mesenchyme 5. Disease relevance spans multiple ciliopathies: IFT88 mutations contribute to orofacial clefting, intervertebral disc degeneration, and osteoarthritis, where reduced expression correlates with cartilage degradation 546. CEP76 dysfunction impairs IFT88-mediated anterograde transport, expanding the spectrum of centrosome-cilium interface disorders 7. Understanding IFT88 regulation offers therapeutic targets for ciliopathies and degenerative diseases.

Sources cited
1
IFT88 is a crucial IFT-B component regulating cilium assembly, organ fibrosis, metabolic regulation, and cilium-independent functions like spindle orientation
PMID: 40076734
2
UFMylation of IFT88 at K572 by UFL1 antagonizes PJA2-mediated ubiquitination and proteasomal degradation to maintain ciliary homeostasis
PMID: 41272290
3
IFT88 is required for asparagine synthetase expression at ciliary base and glutamine-dependent mitochondrial anaplerosis during metabolic stress
PMID: 36879119
4
IFT88 inhibits TRPV4 activation under excessive mechanical stress, reducing calcium influx and preventing endplate cartilage calcification in intervertebral disc degeneration
PMID: 40441296
5
IFT88 mutations cause cleft lip and palate through disrupted primary cilia function and decreased Sonic hedgehog signaling in cranial neural crest-derived mesenchyme
PMID: 28069795
6
CEP76 variants impair IFT88-mediated anterograde intraflagellar transport and cilium formation, contributing to ciliopathies
PMID: 41105778
7
IFT88 is identified as a biomarker in knee osteoarthritis associated with ferroptosis-driven immune dysfunction
PMID: 40636124
Disease Associationsⓘ20
retinitis pigmentosaOpen Targets
0.40Weak
alcohol drinkingOpen Targets
0.33Weak
nerve plexus diseaseOpen Targets
0.32Weak
insomniaOpen Targets
0.31Weak
Rod-cone dystrophyOpen Targets
0.30Weak
diabetes mellitusOpen Targets
0.22Weak
nutritional deficiency diseaseOpen Targets
0.13Weak
hepatocellular carcinomaOpen Targets
0.09Suggestive
polydactyly of a triphalangeal thumbOpen Targets
0.09Suggestive
Syndactyly type 2Open Targets
0.09Suggestive
syndactyly type 4Open Targets
0.08Suggestive
Triphalangeal thumb - polysyndactyly syndromeOpen Targets
0.08Suggestive
renal cysts and diabetes syndromeOpen Targets
0.08Suggestive
PolysyndactylyOpen Targets
0.08Suggestive
polysyndactyly 4Open Targets
0.08Suggestive
synpolydactyly type 1Open Targets
0.08Suggestive
triphalangeal thumb-polysyndactyly syndromeOpen Targets
0.07Suggestive
lung adenocarcinomaOpen Targets
0.07Suggestive
brachydactyly type COpen Targets
0.07Suggestive
polydactyly of an index fingerOpen Targets
0.07Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
IFT22Protein interaction100%BBS5Protein interaction100%BBS7Protein interaction100%DYNC2LI1Protein interaction100%IFT81Protein interaction100%IFT38Protein interaction100%
Tissue Expression6 tissues
Liver
100%
Ovary
87%
Bone Marrow
78%
Heart
48%
Brain
43%
Lung
39%
Gene Interaction Network
Click a node to explore
IFT88IFT22BBS5BBS7DYNC2LI1IFT81IFT38
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q13099
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.02LoF Tolerant
pLIⓘ
0.09Tolerant
Observed/Expected LoF0.52 [0.28–1.02]
RankingsWhere IFT88 stands among ~20K protein-coding genes
  • #6,551of 20,598
    Most Researched72
  • #10,073of 17,882
    Most Constrained (LOEUF)1.02
Genes detectedIFT88
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Ciliary and Non-Ciliary Roles of IFT88 in Development and Diseases.
PMID: 40076734
Int J Mol Sci · 2025
1.00
2
UFL1-mediated UFMylation antagonizes IFT88 ubiquitination and degradation to maintain ciliary homeostasis.
PMID: 41272290
Cell Death Differ · 2025
0.90
3
Primary cilia sense glutamine availability and respond via asparagine synthetase.
PMID: 36879119
Nat Metab · 2023
0.80
4
Single-cell transcriptome and multi-omics integration reveal ferroptosis-driven immune microenvironment remodeling in knee osteoarthritis.
PMID: 40636124
Front Immunol · 2025
0.70
5
CEP76 impairment at the centrosome-cilium interface contributes to a spectrum of ciliopathies.
PMID: 41105778
Sci Adv · 2025
0.60