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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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INO80E
INO80 complex subunit E
Chromosome 16 · 16p11.2
NCBI Gene: 283899Ensembl: ENSG00000169592.15HGNC: HGNC:26905UniProt: J3KNE2
46PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
DNA RepairTranscription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingregulation of DNA replicationchromatin remodelingregulation of chromosome organizationneurodegenerative diseaseAbnormality of the skeletal systemschizophreniaosteoarthritis, knee
✦AI Summary

INO80E (INO80 complex subunit E) encodes a putative regulatory component of the chr16-remodeling INO80 complex involved in transcriptional regulation, DNA replication, and DNA repair. As a member of the INO80 complex, INO80E participates in chr16 remodeling and regulation of chromosome 16, cell cycle progression, and DNA strand elongation 1. Mechanistically, INO80E expression is regulated through sense/antisense interactions with its head-to-head overlapping partner HIRIP3, where overlapping transcripts form RNA:RNA duplexes that stabilize mRNAs, potentially mediated by ELAVL1 protein, while R-loops may also positively regulate gene expression 2. INO80E has emerged as a significant risk gene across multiple neurodevelopmental and neurological disorders. Elevated INO80E mRNA expression in the frontal cortex associates with schizophrenia risk 3, and mice overexpressing Ino80e in the medial prefrontal cortex exhibit schizophrenia-like behaviors including anxiety, anhedonia, and impaired prepulse inhibition, with altered dendritic spine density and dysregulated synaptic gene expression 3. INO80E dysregulation in excitatory neurons' superficial cortical layers is influenced by schizophrenia polygenic risk 1. Additionally, INO80E has been identified as a genetic risk factor for Lewy body dementia 4, shared genetic architecture with obesity and psychiatric disorders 5, and as a potential diagnostic marker for endometriosis 6. These findings position INO80E as a pleiotropic gene with favorable neuropsychiatric profiles 7.

Sources cited
1
INO80E upregulation in medial prefrontal cortex increases schizophrenia risk and induces schizophrenia-like behaviors in mice with altered dendritic spines and dysregulated synaptic gene expression
PMID: 40088626
2
INO80E exhibits dysregulation in excitatory neurons' superficial layers 2/3 influenced by schizophrenia polygenic risk in orbitofrontal cortex
PMID: 40053590
3
INO80E expression is regulated through sense/antisense RNA interactions with HIRIP3 forming stabilizing RNA:RNA duplexes and R-loops that regulate transcription
PMID: 40057624
4
INO80E is identified as a candidate causal gene for Lewy body dementia with clinical utility as a potential drug target
PMID: 41068259
5
INO80E shows shared genetic architecture between obesity and psychiatric disorders including schizophrenia and major depressive disorder
PMID: 36137488
6
INO80E is identified as a gene with favorable neuropsychiatric profiles in alcohol use disorder genetic analysis
PMID: 39528761
7
INO80E is identified as a potential diagnostic marker and drug target for endometriosis through Mendelian randomization analysis
PMID: 39978332
8
INO80E upregulation within 16p11.2 CNV region associates with schizophrenia risk, while downregulation associates with increased BMI
PMID: 34715901
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.35Weak
Abnormality of the skeletal systemOpen Targets
0.13Weak
schizophreniaOpen Targets
0.13Weak
osteoarthritis, kneeOpen Targets
0.10Weak
metabolic syndromeOpen Targets
0.10Suggestive
insomniaOpen Targets
0.10Suggestive
bipolar disorderOpen Targets
0.08Suggestive
intelligenceOpen Targets
0.08Suggestive
diabetic neuropathyOpen Targets
0.08Suggestive
essential hypertensionOpen Targets
0.08Suggestive
type 2 diabetes mellitusOpen Targets
0.07Suggestive
smoking behaviorOpen Targets
0.07Suggestive
tympanic membrane perforationOpen Targets
0.07Suggestive
obesityOpen Targets
0.07Suggestive
hypertensionOpen Targets
0.06Suggestive
morbid obesityOpen Targets
0.06Suggestive
Alzheimer diseaseOpen Targets
0.05Suggestive
major depressive disorderOpen Targets
0.05Suggestive
dental cariesOpen Targets
0.05Suggestive
attention deficit hyperactivity disorderOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
INO80BProtein interaction100%ACTL6AProtein interaction100%RUVBL2Protein interaction100%BRD8Protein interaction100%ING3Protein interaction100%INO80Protein interaction100%
Tissue Expression6 tissues
Liver
100%
Ovary
87%
Lung
72%
Heart
44%
Brain
40%
Bone Marrow
38%
Gene Interaction Network
Click a node to explore
INO80EINO80BACTL6ARUVBL2BRD8ING3INO80
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q8NBZ0
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.28LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.88 [0.62–1.28]
RankingsWhere INO80E stands among ~20K protein-coding genes
  • #9,337of 20,598
    Most Researched46
  • #13,507of 17,882
    Most Constrained (LOEUF)1.28
Genes detectedINO80E
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Contrasting genetic predisposition and diagnosis in psychiatric disorders: A multi-omic single-nucleus analysis of the human OFC.
PMID: 40053590
Sci Adv · 2025
1.00
2
A multi-omics Mendelian randomization study identifies new therapeutic targets for alcohol use disorder and problem drinking.
PMID: 39528761
Nat Hum Behav · 2025
0.90
3
The INO80E at 16p11.2 locus increases risk of schizophrenia in humans and induces schizophrenia-like phenotypes in mice.
PMID: 40088626
EBioMedicine · 2025
0.80
4
Genome-wide association study provides insights into the genetic basis of Lewy body dementia.
PMID: 41068259
Mol Psychiatry · 2025
0.70
5
Shared genetics between classes of obesity and psychiatric disorders: A large-scale genome-wide cross-trait analysis.
PMID: 36137488
J Psychosom Res · 2022
0.60