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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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INTS10
integrator complex subunit 10
Chromosome 8 · 8p21.3
NCBI Gene: 55174Ensembl: ENSG00000104613.13HGNC: HGNC:25548UniProt: Q9NVR2
49PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingsnRNA processingregulation of transcription elongation by RNA polymerase IIRNA polymerase II transcription initiation surveillancemetabolic syndromecomplex regional pain syndromeesophageal ulcertype 2 diabetes mellitus
✦AI Summary

INTS10 is a core component of the integrator complex, a multiprotein machinery that terminates RNA polymerase II (Pol II) transcription in promoter-proximal regions 1. Within the integrator complex, INTS10 forms functional modules with other subunits: it associates with INTS13, INTS14, and INTS15 to create a 'scorpion-tail-shaped' module that facilitates transcription termination by opening the DSIF DNA clamp 1. INTS10 also participates in the INTS10-INTS13-INTS14 nucleic acid-binding module, which shows preferential affinity for RNA hairpins and plays accessory roles in small nuclear RNA (snRNA) processing while having stronger influence on transcription termination after pausing 2. Beyond transcription regulation, INTS10 demonstrates antiviral properties, suppressing hepatitis B virus (HBV) replication via IRF3 signaling in liver cells, with decreased INTS10 levels correlating with higher HBV loads in persistently infected patients 3. Genetic polymorphisms in INTS10 affect HBV clearance and progression to hepatocellular carcinoma 4. Recent evidence reveals INTS10's role in early neural development, where it functions as part of an enhancer module that stabilizes SOX2 binding at neural enhancers during cell fate specification, with its depletion causing cells to shift from neural to mesenchymal identity 5.

Sources cited
1
INTS10 is part of a scorpion-tail-shaped module that facilitates transcription termination by opening the DSIF DNA clamp
PMID: 38570683
2
INTS10 forms a nucleic acid-binding module with INTS13-INTS14 that has stronger influence on transcription termination after pausing
PMID: 32647223
3
INTS10 suppresses HBV replication via IRF3 and is decreased in persistently infected patients
PMID: 27244555
4
INTS10 genetic polymorphisms affect HBV clearance and hepatocellular carcinoma progression
PMID: 34133796
5
INTS10 functions in an enhancer module that stabilizes SOX2 binding during neural fate specification
PMID: 39592860
Disease Associationsⓘ20
metabolic syndromeOpen Targets
0.37Weak
complex regional pain syndromeOpen Targets
0.30Weak
esophageal ulcerOpen Targets
0.30Weak
type 2 diabetes mellitusOpen Targets
0.29Weak
acute lymphoblastic leukemiaOpen Targets
0.28Weak
connective tissue neoplasmOpen Targets
0.23Weak
alcohol drinkingOpen Targets
0.23Weak
hyperlipidemiaOpen Targets
0.22Weak
familial lipoprotein lipase deficiencyOpen Targets
0.22Weak
bone neoplasmOpen Targets
0.19Weak
ParaproteinemiaOpen Targets
0.16Weak
diabetes mellitusOpen Targets
0.09Suggestive
venous thromboembolismOpen Targets
0.07Suggestive
hepatitis B virus infectionOpen Targets
0.05Suggestive
chronic hepatitis B virus infectionOpen Targets
0.05Suggestive
hypotensionOpen Targets
0.04Suggestive
Abnormality of the skeletal systemOpen Targets
0.04Suggestive
VertigoOpen Targets
0.04Suggestive
HypoventilationOpen Targets
0.04Suggestive
Abruptio PlacentaeOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
INTS15Shared pathway100%POLR2AProtein interaction100%INTS1Protein interaction99%INTS4Protein interaction99%INTS7Protein interaction99%INTS6Protein interaction99%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
89%
Lung
53%
Heart
47%
Ovary
46%
Brain
43%
Gene Interaction Network
Click a node to explore
INTS10INTS15POLR2AINTS1INTS4INTS7INTS6
PROTEIN STRUCTURE
Preparing viewer…
PDB8RC4 · 3.10 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.69LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.50 [0.36–0.69]
RankingsWhere INTS10 stands among ~20K protein-coding genes
  • #8,959of 20,598
    Most Researched49
  • #5,153of 17,882
    Most Constrained (LOEUF)0.69
Genes detectedINTS10
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Structural basis of Integrator-dependent RNA polymerase II termination.
PMID: 38570683
Nature · 2024
1.00
2
Structural basis of the Integrator complex assembly and association with transcription factors.
PMID: 38823386
Mol Cell · 2024
0.90
3
Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.
PMID: 27244555
Nat Commun · 2016
0.80
4
Effects of genetic polymorphisms in INTS10 and their interaction with environmental factors on progression from persistent HBV infection to hepatocellular carcinoma.
PMID: 34133796
Mol Carcinog · 2021
0.70
5
INTS10-INTS13-INTS14 form a functional module of Integrator that binds nucleic acids and the cleavage module.
PMID: 32647223
Nat Commun · 2020
0.60